Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10872326	1.00[JPT][hapmap]
rs11154427	1.00[JPT][hapmap]
rs11751398	1.00[JPT][hapmap]
rs11752750	1.00[JPT][hapmap]
rs11752963	1.00[JPT][hapmap]
rs11961390	1.00[JPT][hapmap]
rs11962700	1.00[JPT][hapmap]
rs11967577	1.00[JPT][hapmap]
rs12153861	1.00[JPT][hapmap]
rs12193453	1.00[JPT][hapmap]
rs12193548	1.00[JPT][hapmap]
rs12194062	0.83[EUR][1000 genomes]
rs12204618	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12205701	1.00[JPT][hapmap]
rs12205922	1.00[JPT][hapmap]
rs12212775	1.00[JPT][hapmap]
rs12213305	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12214876	1.00[JPT][hapmap]
rs13202957	1.00[JPT][hapmap]
rs13211550	1.00[JPT][hapmap]
rs13214678	1.00[JPT][hapmap]
rs198523	0.82[YRI][hapmap]
rs269994	1.00[JPT][hapmap]
rs270023	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270051	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243492	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs451472	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895826	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs6907718	1.00[ASN][1000 genomes]
rs6922159	1.00[JPT][hapmap]
rs802709	0.93[YRI][hapmap]
rs802712	0.93[YRI][hapmap]
rs920992	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128191400-128198800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128191600-128198600	Weak transcription	Thymus	Thymus
3	chr6:128192600-128194400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:128192800-128197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:128193200-128195400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:128193400-128194000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:128193400-128194000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:128193400-128194200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:128193400-128198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:128193800-128194000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
11	chr6:128193800-128194000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:128193800-128194200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:128193800-128195200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
14	chr6:128193800-128197800	Strong transcription	Fetal Thymus	thymus

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