Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10872326	1.00[JPT][hapmap]
rs11154427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11751398	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752963	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11961390	1.00[JPT][hapmap]
rs11962700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12153861	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12189937	1.00[CHB][hapmap]
rs12193453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12193548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12204618	1.00[JPT][hapmap]
rs12205701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12205922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12206913	1.00[CHB][hapmap]
rs12212775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12213305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12214876	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13202957	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13211550	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13214678	1.00[JPT][hapmap]
rs13219590	1.00[CHB][hapmap]
rs1342649	0.83[EUR][1000 genomes]
rs269994	1.00[JPT][hapmap]
rs269996	0.83[EUR][1000 genomes]
rs269999	0.82[EUR][1000 genomes]
rs270001	0.83[EUR][1000 genomes]
rs270002	0.83[EUR][1000 genomes]
rs270003	0.83[EUR][1000 genomes]
rs270052	1.00[JPT][hapmap]
rs4243492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs451472	1.00[JPT][hapmap]
rs4895826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921729	0.83[EUR][1000 genomes]
rs920992	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
4	chr6:128143000-128149800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:128143800-128151400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:128146600-128149800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:128147200-128151800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:128147200-128156000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:128148200-128151000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:128148200-128151200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:128148400-128149400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128148800-128151200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:128148800-128151200	Strong transcription	Thymus	Thymus
14	chr6:128148800-128158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:128149000-128151000	Strong transcription	Primary T cells from cord blood	blood
16	chr6:128149200-128152600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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