Variant report

Variant	rs1342649
Chromosome Location	chr6:128143774-128143775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484718	1.00[ASN][1000 genomes]
rs11752561	1.00[ASN][1000 genomes]
rs13204742	1.00[ASN][1000 genomes]
rs1445644	0.88[CEU][hapmap]
rs172008	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs269990	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs269991	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs269996	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269999	1.00[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270001	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270002	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270003	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270007	0.85[EUR][1000 genomes]
rs270008	0.85[EUR][1000 genomes]
rs270011	1.00[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs270013	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs270014	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs270015	1.00[CEU][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs2780929	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34867897	1.00[ASN][1000 genomes]
rs36082631	1.00[ASN][1000 genomes]
rs440576	1.00[CEU][hapmap]
rs4895826	0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs67572105	1.00[ASN][1000 genomes]
rs67707912	1.00[ASN][1000 genomes]
rs6921729	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922159	0.83[EUR][1000 genomes]
rs72973730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128127600-128145800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:128137000-128145000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:128139400-128143800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:128139400-128144000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:128139400-128145800	Enhancers	Primary T cells from cord blood	blood
7	chr6:128139600-128178800	Weak transcription	Dnd41	blood
8	chr6:128140000-128145000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:128140200-128148800	Weak transcription	Thymus	Thymus
10	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
11	chr6:128141800-128144800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:128142400-128145200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:128142600-128144000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:128142800-128145000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:128143000-128149800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:128143600-128144400	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links