Variant report

Variant	rs13204742
Chromosome Location	chr6:128245765-128245766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484718	1.00[ASN][1000 genomes]
rs11752561	1.00[ASN][1000 genomes]
rs1342649	1.00[ASN][1000 genomes]
rs269996	1.00[ASN][1000 genomes]
rs269999	1.00[ASN][1000 genomes]
rs270001	1.00[ASN][1000 genomes]
rs270002	1.00[ASN][1000 genomes]
rs270003	1.00[ASN][1000 genomes]
rs2780929	1.00[ASN][1000 genomes]
rs34867897	1.00[ASN][1000 genomes]
rs36082631	1.00[ASN][1000 genomes]
rs67572105	1.00[ASN][1000 genomes]
rs67707912	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921729	1.00[ASN][1000 genomes]
rs72973730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Crohn's disease	23128233	GWAS catalog

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128240000-128246000	Enhancers	Thymus	Thymus
2	chr6:128240200-128246600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:128240400-128246800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:128241400-128246800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:128243800-128246800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128244000-128246800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:128244200-128246800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:128244800-128245800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:128244800-128246200	Enhancers	Primary T cells from cord blood	blood
10	chr6:128245200-128246000	Enhancers	NHEK	skin
11	chr6:128245200-128246200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:128245400-128246000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:128245600-128246800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links