Variant report

Variant	rs11752561
Chromosome Location	chr6:128187461-128187462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484718	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204742	1.00[ASN][1000 genomes]
rs1342649	1.00[ASN][1000 genomes]
rs269996	1.00[ASN][1000 genomes]
rs269999	1.00[ASN][1000 genomes]
rs270001	1.00[ASN][1000 genomes]
rs270002	1.00[ASN][1000 genomes]
rs270003	1.00[ASN][1000 genomes]
rs2780929	1.00[ASN][1000 genomes]
rs34867897	1.00[ASN][1000 genomes]
rs36082631	1.00[ASN][1000 genomes]
rs67572105	1.00[ASN][1000 genomes]
rs67707912	1.00[ASN][1000 genomes]
rs6921729	1.00[ASN][1000 genomes]
rs72973730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:128180400-128189600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:128180400-128190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128180600-128189600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:128186200-128188400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:128186400-128188200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:128186400-128190800	Weak transcription	Thymus	Thymus
9	chr6:128186400-128191000	Enhancers	Primary T cells from cord blood	blood
10	chr6:128186600-128190400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:128187000-128188200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128187200-128188200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:128187200-128188200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:128187200-128188400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:128187200-128188400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:128187200-128189400	Weak transcription	Fetal Thymus	thymus
17	chr6:128187400-128188400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:128187400-128193400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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