Variant report

Variant	rs270001
Chromosome Location	chr6:128146789-128146790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484718	1.00[ASN][1000 genomes]
rs11752561	1.00[ASN][1000 genomes]
rs13204742	1.00[ASN][1000 genomes]
rs1342649	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445644	0.85[CEU][hapmap]
rs172008	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs269990	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs269991	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs269996	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269999	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270002	0.96[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270003	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270007	0.86[EUR][1000 genomes]
rs270008	0.86[EUR][1000 genomes]
rs270011	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs270013	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs270014	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs270015	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2780929	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34867897	1.00[ASN][1000 genomes]
rs36082631	1.00[ASN][1000 genomes]
rs440576	0.95[CEU][hapmap]
rs4895826	0.83[EUR][1000 genomes]
rs67572105	1.00[ASN][1000 genomes]
rs67707912	1.00[ASN][1000 genomes]
rs6921729	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922159	0.83[EUR][1000 genomes]
rs72973730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128140200-128148800	Weak transcription	Thymus	Thymus
4	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
5	chr6:128143000-128149800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:128143800-128151400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:128145400-128146800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:128145600-128148400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:128145800-128147600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128145800-128148200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:128145800-128148200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:128145800-128148800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:128146400-128146800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:128146400-128147200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:128146400-128148200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:128146600-128149800	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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