Variant report

Variant	rs269996
Chromosome Location	chr6:128122727-128122728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10484718	1.00[ASN][1000 genomes]
rs11752561	1.00[ASN][1000 genomes]
rs12201026	0.85[YRI][hapmap]
rs12201136	0.85[YRI][hapmap]
rs13204742	1.00[ASN][1000 genomes]
rs1342649	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445644	0.85[CEU][hapmap]
rs172008	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs269990	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs269991	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs269999	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270001	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270002	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270003	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270007	0.83[EUR][1000 genomes]
rs270008	0.83[EUR][1000 genomes]
rs270011	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs270013	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs270014	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs270015	0.96[CEU][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs2780929	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3009961	1.00[YRI][hapmap]
rs34867897	1.00[ASN][1000 genomes]
rs36082631	1.00[ASN][1000 genomes]
rs440576	1.00[CEU][hapmap]
rs486235	1.00[YRI][hapmap]
rs4895826	0.84[EUR][1000 genomes]
rs490008	1.00[YRI][hapmap]
rs500192	1.00[YRI][hapmap]
rs550875	0.85[YRI][hapmap]
rs669663	0.85[YRI][hapmap]
rs67572105	1.00[ASN][1000 genomes]
rs67707912	1.00[ASN][1000 genomes]
rs683202	1.00[YRI][hapmap]
rs6921729	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922159	0.83[EUR][1000 genomes]
rs72973730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128115600-128139200	Weak transcription	Dnd41	blood
2	chr6:128116600-128129000	Strong transcription	Fetal Thymus	thymus
3	chr6:128117000-128131400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:128119200-128124400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:128119200-128134200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:128119400-128124000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:128119400-128124000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:128119400-128125600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:128121000-128124800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128121200-128124000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128121400-128125400	Strong transcription	Primary T cells from cord blood	blood
12	chr6:128121400-128128200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:128121600-128124000	Strong transcription	Thymus	Thymus
14	chr6:128122000-128123800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:128122400-128122800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:128122600-128123200	Genic enhancers	Primary T helper cells fromperipheralblood	blood

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