Variant report

Variant	rs12213305
Chromosome Location	chr6:128160296-128160297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10872325	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10872326	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11154427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11751398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11961390	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11962700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11965321	1.00[YRI][hapmap]
rs11967577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12153861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12189937	1.00[CHB][hapmap]
rs12193453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12193548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12204618	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12205701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12205922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12206913	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12212775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12214570	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12214876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13202957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13208171	0.92[EUR][1000 genomes]
rs13208319	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13211550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs13214678	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13219590	1.00[CHB][hapmap]
rs269994	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs270023	0.87[ASN][1000 genomes]
rs270051	0.87[ASN][1000 genomes]
rs270052	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs35476985	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4243492	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs451472	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4895826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6907718	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6922159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs920992	1.00[JPT][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128153200-128160600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:128155800-128160600	Weak transcription	Thymus	Thymus
5	chr6:128158000-128160600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:128158200-128160600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:128158200-128160600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:128158200-128160600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:128158200-128161800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:128158400-128160600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128158400-128160600	Weak transcription	Fetal Thymus	thymus
12	chr6:128158400-128161800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:128158400-128166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:128160000-128160400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:128160000-128160800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:128160000-128162800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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