Variant report

Variant	rs13208171
Chromosome Location	chr6:128132332-128132333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10872325	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872326	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11154427	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11752963	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961390	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961701	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962700	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11967577	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153861	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12193453	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193548	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12204618	0.86[EUR][1000 genomes]
rs12204809	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205701	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205922	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206913	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212775	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213305	0.92[EUR][1000 genomes]
rs12214570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214876	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202957	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208319	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211550	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214678	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269994	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35476985	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35898325	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907718	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72965789	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72965790	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs920992	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128115600-128139200	Weak transcription	Dnd41	blood
2	chr6:128119200-128134200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:128127600-128145800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:128127800-128134000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:128129400-128132400	Strong transcription	Fetal Thymus	thymus
6	chr6:128130400-128133200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:128130400-128136200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:128130800-128133200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:128130800-128134200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:128131000-128133000	Genic enhancers	Primary T cells from cord blood	blood
11	chr6:128131400-128133200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:128131400-128134200	Genic enhancers	Thymus	Thymus
13	chr6:128131400-128135000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:128131600-128135200	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr6:128131800-128133800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:128132200-128133800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links