Variant report

Variant	rs13211550
Chromosome Location	chr6:128111733-128111734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10872325	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872326	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11154427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11751398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11752750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961390	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961701	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11967577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189937	1.00[CHB][hapmap]
rs12193453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12204618	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12204809	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206913	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12214570	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208171	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208319	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214678	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219590	1.00[CHB][hapmap]
rs269994	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs270052	1.00[JPT][hapmap]
rs35476985	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35898325	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs451472	1.00[JPT][hapmap]
rs4895826	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6907718	0.81[EUR][1000 genomes]
rs6922159	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72965789	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72965790	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs920992	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128103000-128111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128103600-128113800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:128104400-128113400	Weak transcription	Dnd41	blood
4	chr6:128106000-128114000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:128106200-128113600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:128107400-128119200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:128109400-128111800	Weak transcription	Thymus	Thymus
8	chr6:128110200-128111800	Weak transcription	Fetal Thymus	thymus
9	chr6:128110400-128121000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128110600-128112400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:128111000-128111800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:128111000-128112000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:128111400-128113200	Genic enhancers	Primary T cells from cord blood	blood
14	chr6:128111400-128117200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:128111600-128111800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:128111600-128112000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:128111600-128112400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:128111600-128114000	Genic enhancers	Primary T cells fromperipheralblood	blood
19	chr6:128111600-128119400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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