Variant report

Variant	rs269994
Chromosome Location	chr6:128138976-128138977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10872325	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872326	1.00[JPT][hapmap]
rs11154427	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11751398	1.00[JPT][hapmap]
rs11752750	1.00[JPT][hapmap]
rs11752963	1.00[JPT][hapmap]
rs11961390	1.00[JPT][hapmap]
rs11961701	0.86[ASN][1000 genomes]
rs11962700	1.00[JPT][hapmap]
rs11967577	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12153861	1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12193453	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12193548	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12204618	1.00[JPT][hapmap]
rs12205701	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205922	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12206913	1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs12212775	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12213305	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12214570	0.90[GIH][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12214876	1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13202957	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13208171	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13208319	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13211550	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13214678	1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13219045	0.82[GIH][hapmap]
rs270052	1.00[JPT][hapmap]
rs35476985	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35898325	0.86[ASN][1000 genomes]
rs4243492	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs451472	1.00[JPT][hapmap]
rs4895826	1.00[JPT][hapmap]
rs6922159	1.00[JPT][hapmap]
rs6940280	0.82[GIH][hapmap]
rs7744896	0.82[GIH][hapmap]
rs920992	1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128115600-128139200	Weak transcription	Dnd41	blood
2	chr6:128127600-128145800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:128133000-128139600	Genic enhancers	Fetal Thymus	thymus
4	chr6:128133400-128139200	Genic enhancers	Primary T cells from cord blood	blood
5	chr6:128134000-128141600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:128134800-128139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:128135600-128139000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128136800-128141800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:128136800-128141800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:128137000-128140400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:128137000-128145000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:128137400-128139000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:128137400-128139400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:128137800-128139400	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr6:128138600-128140200	Enhancers	Thymus	Thymus
17	chr6:128138800-128139000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:128138800-128140200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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