Variant report

Variant	rs11967577
Chromosome Location	chr6:128118413-128118414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10872325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872326	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11154427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11751398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961390	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961701	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12153861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189937	1.00[CHB][hapmap]
rs12193453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12198905	0.83[AFR][1000 genomes]
rs12204618	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12204809	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206913	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12214570	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208171	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214678	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219590	1.00[CHB][hapmap]
rs269994	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs270052	1.00[JPT][hapmap]
rs35476985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35898325	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs451472	1.00[JPT][hapmap]
rs4895826	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6907718	0.84[EUR][1000 genomes]
rs6922159	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72965782	1.00[AFR][1000 genomes]
rs72965789	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72965790	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs920992	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128107400-128119200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:128110400-128121000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:128111600-128119400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:128112400-128119400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:128112800-128119200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:128115600-128139200	Weak transcription	Dnd41	blood
7	chr6:128115800-128118600	Weak transcription	Thymus	Thymus
8	chr6:128116600-128129000	Strong transcription	Fetal Thymus	thymus
9	chr6:128117000-128131400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:128117400-128119400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:128117600-128119600	Genic enhancers	Primary T cells from cord blood	blood
12	chr6:128117800-128119400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:128117800-128119800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:128118200-128119000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:128118200-128119200	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr6:128118400-128118600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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