Variant report

Variant	rs4243492
Chromosome Location	chr6:128162928-128162929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10872326	1.00[JPT][hapmap]
rs11154427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11751398	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11752963	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11961390	1.00[JPT][hapmap]
rs11962700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12153861	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12189937	1.00[CHB][hapmap]
rs12193453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12193548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12204618	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12205701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12205922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12206913	1.00[CHB][hapmap]
rs12212775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12213305	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12214876	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13202957	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13211550	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13214678	1.00[JPT][hapmap]
rs13219590	1.00[CHB][hapmap]
rs269994	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs270023	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270051	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs270052	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs451472	0.96[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[ASN][1000 genomes]
rs6907718	0.87[ASN][1000 genomes]
rs6922159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs802709	0.87[YRI][hapmap]
rs802712	0.87[YRI][hapmap]
rs920992	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv525919	chr6:128162392-128162928	Strong transcription Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128158400-128166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:128160600-128163600	Strong transcription	Thymus	Thymus
5	chr6:128160600-128176400	Strong transcription	Fetal Thymus	thymus
6	chr6:128160800-128163200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:128160800-128163200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128161200-128167000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:128161600-128165000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:128162000-128163200	Strong transcription	Primary T cells from cord blood	blood
11	chr6:128162200-128163200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:128162200-128163600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:128162200-128163600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:128162400-128164000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:128162400-128164800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:128162800-128163400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:128162800-128163400	Enhancers	Osteobl	bone
18	chr6:128162800-128164400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:128162800-128174200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links