Variant report

Variant	rs270023
Chromosome Location	chr6:128199846-128199847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12194062	0.81[EUR][1000 genomes]
rs12204618	1.00[ASN][1000 genomes]
rs12213305	0.87[ASN][1000 genomes]
rs270051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270052	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243492	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs451472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907718	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128196600-128211600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128196800-128200200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:128196800-128200800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:128196800-128204000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:128197200-128208200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:128198200-128200600	Enhancers	Fetal Thymus	thymus
7	chr6:128198200-128204600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:128198600-128200400	Enhancers	Thymus	Thymus
9	chr6:128198600-128200800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:128198600-128201000	Enhancers	Dnd41	blood
11	chr6:128199200-128201400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:128199400-128202400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:128199600-128200400	Weak transcription	Brain Substantia Nigra	brain
14	chr6:128199600-128200800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:128199600-128200800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:128199600-128203000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:128199800-128200200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:128199800-128200800	Enhancers	Primary T cells from cord blood	blood
19	chr6:128199800-128200800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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