Variant report

Variant	rs11760285
Chromosome Location	chr7:128179130-128179131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10085435	1.00[ASN][1000 genomes]
rs10227608	1.00[ASN][1000 genomes]
rs10233059	1.00[ASN][1000 genomes]
rs10241185	1.00[ASN][1000 genomes]
rs10242806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10250369	1.00[ASN][1000 genomes]
rs10253131	0.89[ASN][1000 genomes]
rs10259359	1.00[ASN][1000 genomes]
rs10261037	1.00[ASN][1000 genomes]
rs10269844	1.00[ASN][1000 genomes]
rs10270431	0.89[ASN][1000 genomes]
rs10954205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11761662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11766319	1.00[ASN][1000 genomes]
rs11768485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11769546	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770604	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11771884	1.00[ASN][1000 genomes]
rs11772734	0.85[EUR][1000 genomes]
rs12333625	0.89[ASN][1000 genomes]
rs12530672	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536288	1.00[AFR][1000 genomes]
rs12537208	1.00[ASN][1000 genomes]
rs12540658	0.83[EUR][1000 genomes]
rs13224613	0.89[ASN][1000 genomes]
rs13235219	0.89[ASN][1000 genomes]
rs13246302	1.00[ASN][1000 genomes]
rs28496126	1.00[ASN][1000 genomes]
rs28521260	1.00[ASN][1000 genomes]
rs339070	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs339079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs339093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34120723	0.89[ASN][1000 genomes]
rs34125589	0.90[ASN][1000 genomes]
rs34490491	0.89[ASN][1000 genomes]
rs34751214	0.89[ASN][1000 genomes]
rs34887739	1.00[ASN][1000 genomes]
rs35661748	0.81[AMR][1000 genomes]
rs4289745	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55953818	1.00[ASN][1000 genomes]
rs60029447	1.00[ASN][1000 genomes]
rs6467181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6467184	1.00[ASN][1000 genomes]
rs6467201	0.89[ASN][1000 genomes]
rs6958343	1.00[ASN][1000 genomes]
rs6961754	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6963982	1.00[ASN][1000 genomes]
rs6967393	0.89[ASN][1000 genomes]
rs6969343	1.00[ASN][1000 genomes]
rs6971819	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6976879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6977126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71546785	1.00[ASN][1000 genomes]
rs71546786	1.00[ASN][1000 genomes]
rs71578280	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776915	1.00[ASN][1000 genomes]
rs7777625	1.00[ASN][1000 genomes]
rs7786772	1.00[ASN][1000 genomes]
rs7790478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7794447	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7798172	1.00[ASN][1000 genomes]
rs7804472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7810047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7811083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9690225	1.00[ASN][1000 genomes]
rs9690934	0.89[ASN][1000 genomes]
rs9692416	0.89[ASN][1000 genomes]
rs9768808	0.89[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11760285	CICP14	cis	Muscle Skeletal	GTEx
rs11760285	CICP14	cis	Nerve Tibial	GTEx
rs11760285	RP11-274B21.10	cis	Thyroid	GTEx
rs11760285	RP11-274B21.10	cis	Skin Sun Exposed Lower leg	GTEx
rs11760285	CICP14	cis	Thyroid	GTEx
rs11760285	CICP14	cis	lung	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128172600-128179200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:128172600-128179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:128172600-128179600	Weak transcription	Lung	lung
4	chr7:128172600-128184800	Weak transcription	Spleen	Spleen
5	chr7:128172600-128187600	Weak transcription	Pancreas	Pancrea
6	chr7:128172600-128189800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:128172600-128191000	Weak transcription	Ovary	ovary
8	chr7:128172600-128191200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:128172600-128193400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:128172600-128210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:128172600-128214800	Weak transcription	Gastric	stomach
12	chr7:128172800-128239800	Weak transcription	Small Intestine	intestine
13	chr7:128173000-128188000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:128173000-128190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:128173000-128190800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:128173000-128231800	Weak transcription	Colonic Mucosa	Colon
17	chr7:128173000-128231800	Weak transcription	Fetal Kidney	kidney
18	chr7:128173200-128183200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:128173400-128188200	Weak transcription	Fetal Brain Male	brain
20	chr7:128173600-128181200	Weak transcription	Fetal Intestine Large	intestine
21	chr7:128173600-128187200	Weak transcription	Brain Anterior Caudate	brain
22	chr7:128173600-128201000	Weak transcription	Psoas Muscle	Psoas
23	chr7:128173600-128214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:128173800-128183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:128173800-128183200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:128173800-128183200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:128173800-128184800	Weak transcription	Fetal Lung	lung
28	chr7:128173800-128186600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:128173800-128186800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:128173800-128186800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:128173800-128186800	Weak transcription	HMEC	breast
32	chr7:128173800-128186800	Weak transcription	NHDF-Ad	bronchial
33	chr7:128173800-128187000	Weak transcription	Primary B cells from cord blood	blood
34	chr7:128173800-128187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:128173800-128190800	Weak transcription	Brain Substantia Nigra	brain
36	chr7:128173800-128191000	Weak transcription	Brain Angular Gyrus	brain
37	chr7:128173800-128197800	Weak transcription	Right Atrium	heart
38	chr7:128173800-128199800	Weak transcription	Right Ventricle	heart
39	chr7:128173800-128201000	Weak transcription	Brain Germinal Matrix	brain
40	chr7:128173800-128214800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:128173800-128234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:128174000-128179400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr7:128174000-128180200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:128174000-128183200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:128174000-128185400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:128174000-128186800	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:128174000-128187000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:128174000-128187000	Weak transcription	NHEK	skin
49	chr7:128174000-128210600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr7:128174000-128220600	Weak transcription	NHLF	lung

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