Variant report

Variant	rs11760481
Chromosome Location	chr7:40759670-40759671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40754402..40757176-chr7:40759198..40761990,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11760535	1.00[ASN][1000 genomes]
rs11763592	1.00[ASN][1000 genomes]
rs11768774	1.00[ASN][1000 genomes]
rs11772576	1.00[ASN][1000 genomes]
rs17438052	1.00[ASN][1000 genomes]
rs17528582	1.00[ASN][1000 genomes]
rs35456888	1.00[ASN][1000 genomes]
rs4119077	1.00[ASN][1000 genomes]
rs4119078	1.00[ASN][1000 genomes]
rs6956181	1.00[ASN][1000 genomes]
rs6977963	1.00[ASN][1000 genomes]
rs73124005	0.87[ASN][1000 genomes]
rs73124009	0.87[ASN][1000 genomes]
rs73124018	0.87[ASN][1000 genomes]
rs7812176	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1019833	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538824	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887988	chr7:40685811-40782572	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40755800-40759800	Weak transcription	NH-A	brain
2	chr7:40755800-40760200	Weak transcription	Fetal Heart	heart
3	chr7:40757000-40760800	Weak transcription	Fetal Lung	lung
4	chr7:40757000-40764000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:40757200-40760600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:40757400-40759800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:40757400-40759800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:40757400-40759800	Weak transcription	HSMMtube	muscle
9	chr7:40757400-40760000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:40757400-40760600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:40757400-40760600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:40757400-40760600	Weak transcription	NHLF	lung
13	chr7:40757400-40760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:40757400-40761200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:40757400-40761800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:40757800-40760200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:40758200-40759800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:40758200-40759800	Weak transcription	NHDF-Ad	bronchial
19	chr7:40758200-40759800	Weak transcription	Osteobl	bone
20	chr7:40758200-40760600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:40758400-40759800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:40758600-40761400	Enhancers	HMEC	breast
23	chr7:40759200-40760200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:40759200-40760600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:40759200-40762800	Weak transcription	Aorta	Aorta
26	chr7:40759600-40761000	Enhancers	NHEK	skin
27	chr7:40759600-40761200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:40759600-40761200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:40759600-40761400	Enhancers	HSMM	muscle

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