Variant report

Variant	rs11760535
Chromosome Location	chr7:40754015-40754016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10251707	1.00[CHB][hapmap]
rs11760481	1.00[ASN][1000 genomes]
rs11761250	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11761336	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11763592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155334	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs17171734	1.00[CHB][hapmap]
rs17437429	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17438052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17528214	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17528582	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329818	1.00[CHB][hapmap]
rs34523428	1.00[CHB][hapmap]
rs35456888	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3919491	1.00[CHB][hapmap]
rs4119077	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4119078	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720370	1.00[CHB][hapmap]
rs6462988	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs67777497	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6956181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977432	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6977963	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73124005	0.87[ASN][1000 genomes]
rs73124009	0.87[ASN][1000 genomes]
rs73124018	0.87[ASN][1000 genomes]
rs73124030	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7779570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7800409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7812176	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1019833	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538824	chr7:40649369-40767377	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887988	chr7:40685811-40782572	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40749200-40754200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:40749200-40754800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:40751800-40755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:40751800-40757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:40752000-40754200	Weak transcription	HMEC	breast
6	chr7:40752000-40755600	Weak transcription	NHEK	skin
7	chr7:40752200-40755400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:40752600-40756200	Enhancers	Ovary	ovary
9	chr7:40752800-40755800	Enhancers	Aorta	Aorta
10	chr7:40752800-40756600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:40753000-40754800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:40753200-40755400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:40753200-40756600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:40753400-40756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:40753800-40755400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:40753800-40755800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:40753800-40755800	Enhancers	Fetal Muscle Leg	muscle
18	chr7:40753800-40756600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:40753800-40758200	Enhancers	Osteobl	bone
20	chr7:40754000-40754600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:40754000-40754600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr7:40754000-40756200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:40754000-40757800	Enhancers	HSMM	muscle
24	chr7:40754000-40758200	Enhancers	NHDF-Ad	bronchial

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