Variant report

Variant	rs11761429
Chromosome Location	chr7:104943125-104943126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10227302	0.84[ASN][1000 genomes]
rs10241415	0.87[ASN][1000 genomes]
rs10953474	0.82[ASN][1000 genomes]
rs1121194	0.87[ASN][1000 genomes]
rs11765899	0.82[ASN][1000 genomes]
rs11980772	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1204056	0.84[ASN][1000 genomes]
rs1204058	0.87[ASN][1000 genomes]
rs1204060	0.87[ASN][1000 genomes]
rs1204066	0.87[ASN][1000 genomes]
rs1204077	0.84[ASN][1000 genomes]
rs1204078	0.87[ASN][1000 genomes]
rs1204080	0.87[ASN][1000 genomes]
rs12334245	0.87[ASN][1000 genomes]
rs12668040	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12668097	0.87[ASN][1000 genomes]
rs12671047	0.87[ASN][1000 genomes]
rs12705304	0.81[ASN][1000 genomes]
rs12705306	0.87[ASN][1000 genomes]
rs12705308	0.87[ASN][1000 genomes]
rs13238191	0.89[ASN][1000 genomes]
rs13239067	0.89[ASN][1000 genomes]
rs2030776	0.87[ASN][1000 genomes]
rs2040914	0.87[ASN][1000 genomes]
rs2057883	0.85[ASN][1000 genomes]
rs2237612	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299319	0.80[ASN][1000 genomes]
rs34387062	0.84[ASN][1000 genomes]
rs35601145	0.81[ASN][1000 genomes]
rs35757884	0.84[ASN][1000 genomes]
rs35851667	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801281	0.80[ASN][1000 genomes]
rs3801282	0.80[ASN][1000 genomes]
rs3801999	0.84[ASN][1000 genomes]
rs4496901	0.80[ASN][1000 genomes]
rs4727621	0.82[ASN][1000 genomes]
rs4730080	0.87[ASN][1000 genomes]
rs4730081	0.86[ASN][1000 genomes]
rs4730082	0.84[ASN][1000 genomes]
rs62484712	0.87[ASN][1000 genomes]
rs6466053	0.81[ASN][1000 genomes]
rs6466055	0.85[ASN][1000 genomes]
rs6466056	0.85[ASN][1000 genomes]
rs6466057	0.87[ASN][1000 genomes]
rs6466064	0.84[ASN][1000 genomes]
rs66599006	0.87[ASN][1000 genomes]
rs6962856	0.87[ASN][1000 genomes]
rs7357199	0.84[ASN][1000 genomes]
rs7789569	0.85[ASN][1000 genomes]
rs7800928	0.87[ASN][1000 genomes]
rs7806591	0.85[ASN][1000 genomes]
rs7811681	0.85[ASN][1000 genomes]
rs9649275	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv888928	chr7:104897964-104944847	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1029832	chr7:104905057-105112489	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv2753646	chr7:104905588-104972800	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv1803707	chr7:104928335-104948317	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104910800-104946000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:104917200-104944600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:104920600-104959600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:104923200-104944200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:104925000-104944200	Weak transcription	A549	lung
6	chr7:104926400-104944600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:104929400-104944600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:104929800-104944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:104934800-104944200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:104935000-104944200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:104937800-104944000	Weak transcription	HepG2	liver
12	chr7:104939200-104954400	Weak transcription	Stomach Mucosa	stomach
13	chr7:104939400-104944400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:104939400-104950200	Weak transcription	Psoas Muscle	Psoas
15	chr7:104939400-104950200	Weak transcription	Right Atrium	heart
16	chr7:104939600-104944200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:104939600-104944400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:104939600-104944600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:104939600-104944600	Weak transcription	Ovary	ovary
20	chr7:104939600-104945200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:104939600-104945200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:104939600-104945600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:104939600-104947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:104939600-104950200	Weak transcription	Gastric	stomach
25	chr7:104939600-104950200	Weak transcription	Pancreas	Pancrea
26	chr7:104939600-104966200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:104939800-104944200	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:104939800-104944400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:104939800-104944400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:104939800-104944600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:104939800-104944600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:104939800-104944800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr7:104939800-104946400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:104939800-104950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:104939800-104950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:104940000-104944600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:104940200-104944400	Weak transcription	Thymus	Thymus
38	chr7:104940400-104944400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:104940800-104944400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:104940800-104949200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:104941000-104944200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:104941000-104944600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr7:104941200-104944400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr7:104941200-104944400	Enhancers	Dnd41	blood
45	chr7:104941200-104944600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:104941400-104946400	Weak transcription	Primary T cells from cord blood	blood
47	chr7:104942000-104944600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:104942000-104945200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr7:104942000-104950200	Weak transcription	Esophagus	oesophagus
50	chr7:104942000-104953200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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