Variant report

Variant	rs9649275
Chromosome Location	chr7:104935801-104935802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104935027..104937759-chr7:104947845..104950749,2	K562	blood:
2	chr7:104930219..104933081-chr7:104934544..104936219,2	K562	blood:
3	chr7:104909811..104911853-chr7:104934398..104937099,2	K562	blood:
4	chr7:104922381..104923956-chr7:104935072..104936834,2	MCF-7	breast:
5	chr7:104935439..104938791-chr7:104944886..104947910,3	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10227302	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10241415	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10277120	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10281422	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10281886	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953470	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10953474	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1121194	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11761429	0.87[ASN][1000 genomes]
rs11765899	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11980772	0.81[ASN][1000 genomes]
rs1204056	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204058	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204060	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204066	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204077	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204078	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204080	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12334245	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12668040	0.81[ASN][1000 genomes]
rs12668097	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12671047	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12705304	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705306	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12705308	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13226540	0.87[EUR][1000 genomes]
rs13238191	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13239067	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2030776	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040914	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057883	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2057884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2237613	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2240463	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299308	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299319	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34387062	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35601145	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35757884	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35851667	0.85[ASN][1000 genomes]
rs3779210	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801278	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3801281	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3801282	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3801285	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801999	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41562	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41563	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4496901	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4727621	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4730072	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730073	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730080	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730081	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730082	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62484712	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466053	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466055	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466056	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466057	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466064	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66599006	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943183	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6952386	0.84[ASN][1000 genomes]
rs6962856	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7357199	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7789569	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7800928	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7801804	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7806591	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811681	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs917114	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9640686	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv888928	chr7:104897964-104944847	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1029832	chr7:104905057-105112489	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv2753646	chr7:104905588-104972800	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv1803707	chr7:104928335-104948317	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104910800-104946000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:104912200-104939200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:104913200-104936200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:104917200-104944600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:104918200-104939000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:104919200-104939000	Weak transcription	Pancreas	Pancrea
7	chr7:104919800-104939000	Weak transcription	Thymus	Thymus
8	chr7:104919800-104939200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:104920400-104939200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:104920600-104937200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:104920600-104959600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:104923200-104944200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:104924800-104939000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:104924800-104939200	Weak transcription	Left Ventricle	heart
15	chr7:104925000-104936200	Weak transcription	HepG2	liver
16	chr7:104925000-104944200	Weak transcription	A549	lung
17	chr7:104926400-104944600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:104929000-104939200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:104929400-104944600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:104929600-104938800	Weak transcription	Fetal Thymus	thymus
21	chr7:104929800-104944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:104930600-104936600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:104930800-104936200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:104930800-104937200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:104931800-104936200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:104931800-104936200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:104934400-104936000	Enhancers	Dnd41	blood
28	chr7:104934600-104937600	Weak transcription	K562	blood
29	chr7:104934600-104939200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:104934600-104939200	Weak transcription	Brain Substantia Nigra	brain
31	chr7:104934800-104936000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:104934800-104938800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:104934800-104939000	Weak transcription	Psoas Muscle	Psoas
34	chr7:104934800-104939200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:104934800-104939200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:104934800-104944200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:104935000-104936200	Weak transcription	Fetal Heart	heart
38	chr7:104935000-104937200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:104935000-104939200	Weak transcription	Brain Hippocampus Middle	brain
40	chr7:104935000-104939400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:104935000-104942200	Weak transcription	Brain Anterior Caudate	brain
42	chr7:104935000-104944200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:104935200-104936000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:104935200-104936400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:104935200-104938600	Weak transcription	Primary T cells from cord blood	blood
46	chr7:104935200-104942400	Weak transcription	Brain Angular Gyrus	brain
47	chr7:104935600-104938400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:104935800-104936800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links