Variant report
| Variant | rs11762075 |
|---|---|
| Chromosome Location | chr7:68968288-68968289 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10265771 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11771695 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12671695 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2533426 | 0.83[AMR][1000 genomes] |
| rs2533454 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2533455 | 0.83[AMR][1000 genomes] |
| rs2533457 | 0.82[AMR][1000 genomes] |
| rs2851513 | 0.83[AMR][1000 genomes] |
| rs41849 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs41852 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs41856 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs41859 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs41860 | 0.84[AMR][1000 genomes] |
| rs41861 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs41866 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs41868 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62454902 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62454903 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6944645 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6974900 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7786584 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023885 | chr7:68894896-69158290 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv538915 | chr7:68894896-69158290 | Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv916011 | chr7:68942155-69330800 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv5782 | chr7:68946883-68991904 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:68968000-68968600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
