Variant report

Variant	rs62454902
Chromosome Location	chr7:68959613-68959614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10265771	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11762075	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11771695	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12671695	0.81[AMR][1000 genomes]
rs41849	0.82[AMR][1000 genomes]
rs41852	0.86[AMR][1000 genomes]
rs41856	0.91[AMR][1000 genomes]
rs41859	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41860	0.82[AMR][1000 genomes]
rs41861	0.90[AMR][1000 genomes]
rs41866	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41868	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62454903	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6944645	0.82[AMR][1000 genomes]
rs6974900	0.81[AMR][1000 genomes]
rs7786584	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv5782	chr7:68946883-68991904	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:68957800-68961200	Enhancers	Primary B cells from cord blood	blood
2	chr7:68958200-68960200	Enhancers	Primary B cells from peripheral blood	blood
3	chr7:68958400-68960000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:68958400-68960200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:68958400-68960200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:68958400-68960400	Enhancers	Primary hematopoietic stem cells	blood
7	chr7:68958600-68960000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:68959000-68960000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr7:68959200-68961000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:68959400-68960200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:68959400-68960800	Weak transcription	Fetal Thymus	thymus
12	chr7:68959600-68960200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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