Variant report

Variant	rs11763499
Chromosome Location	chr7:27738872-27738873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27737615..27739453-chr7:27754350..27756193,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11766320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155666	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17611937	0.93[EUR][1000 genomes]
rs17685046	0.92[EUR][1000 genomes]
rs2237337	0.93[EUR][1000 genomes]
rs2391486	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55714615	0.95[EUR][1000 genomes]
rs55738305	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56137979	0.94[EUR][1000 genomes]
rs61538692	0.94[EUR][1000 genomes]
rs62449631	0.93[EUR][1000 genomes]
rs62454807	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62454947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6950949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6957836	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958125	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6974060	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6974991	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808062	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs960293	0.93[EUR][1000 genomes]
rs960294	0.93[EUR][1000 genomes]
rs9638846	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9638847	0.94[EUR][1000 genomes]
rs9639563	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9639564	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11763499	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:27734200-27742600	Weak transcription	Osteobl	bone
3	chr7:27734800-27740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:27736600-27739400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:27737600-27739400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:27738000-27740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:27738000-27742400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:27738200-27749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:27738600-27739200	Enhancers	Monocytes-CD14+_RO01746	blood

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