Variant report

Variant	rs56137979
Chromosome Location	chr7:27769958-27769959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27754406..27757331-chr7:27767738..27770016,2	K562	blood:
2	chr7:27751979..27753711-chr7:27767653..27770152,2	MCF-7	breast:
3	chr7:27768892..27770832-chr7:27772047..27773874,2	K562	blood:
4	chr7:27763575..27766795-chr7:27768308..27771533,3	K562	blood:
5	chr7:27769469..27771937-chr7:27776891..27779801,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11763499	0.94[EUR][1000 genomes]
rs11766320	0.93[EUR][1000 genomes]
rs17155666	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17611937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17685046	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051829	0.88[ASN][1000 genomes]
rs2237337	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2391486	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34369550	0.97[ASN][1000 genomes]
rs4722732	0.95[ASN][1000 genomes]
rs4722733	0.98[ASN][1000 genomes]
rs4722739	0.99[ASN][1000 genomes]
rs4722742	0.84[ASN][1000 genomes]
rs55714615	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55738305	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61538692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449631	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454807	0.93[EUR][1000 genomes]
rs62454947	0.93[EUR][1000 genomes]
rs6462043	0.93[EUR][1000 genomes]
rs6950949	0.93[EUR][1000 genomes]
rs6957836	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6958125	0.93[EUR][1000 genomes]
rs6974060	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6974991	0.93[EUR][1000 genomes]
rs6978847	1.00[ASN][1000 genomes]
rs757964	0.97[ASN][1000 genomes]
rs7785305	0.96[ASN][1000 genomes]
rs7796790	0.94[ASN][1000 genomes]
rs7804317	0.96[ASN][1000 genomes]
rs7808062	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs960293	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs960294	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638846	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9638847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9639563	0.93[EUR][1000 genomes]
rs9639564	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56137979	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27760000-27778800	Weak transcription	HSMMtube	muscle
2	chr7:27769000-27771000	Weak transcription	HepG2	liver
3	chr7:27769800-27770000	Enhancers	Right Atrium	heart
4	chr7:27769800-27770600	Enhancers	Pancreas	Pancrea
5	chr7:27769800-27771000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:27769800-27771000	Enhancers	K562	blood
7	chr7:27769800-27771200	Enhancers	Gastric	stomach

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