Variant report

Variant	rs7804317
Chromosome Location	chr7:27736581-27736582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27735644..27737460-chr7:27744918..27746710,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11973028	0.84[EUR][1000 genomes]
rs12700836	0.81[ASN][1000 genomes]
rs17611937	0.94[ASN][1000 genomes]
rs17685046	0.96[ASN][1000 genomes]
rs2051829	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237337	0.95[ASN][1000 genomes]
rs2391486	0.83[ASN][1000 genomes]
rs34369550	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4722732	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722733	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722739	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4722742	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55714615	0.98[ASN][1000 genomes]
rs56137979	0.96[ASN][1000 genomes]
rs61538692	0.96[ASN][1000 genomes]
rs62449631	0.96[ASN][1000 genomes]
rs6462056	0.81[EUR][1000 genomes]
rs6974060	0.96[ASN][1000 genomes]
rs6978847	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs757964	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7785305	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7796790	0.93[ASN][1000 genomes]
rs7808062	0.93[ASN][1000 genomes]
rs960293	0.95[ASN][1000 genomes]
rs960294	0.96[ASN][1000 genomes]
rs9638847	0.96[ASN][1000 genomes]
rs9639564	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7804317	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:27733800-27737200	Weak transcription	Primary B cells from cord blood	blood
3	chr7:27733800-27737200	Weak transcription	NHDF-Ad	bronchial
4	chr7:27733800-27737400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:27733800-27737600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:27733800-27737600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:27734000-27736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:27734000-27736800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:27734000-27737400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:27734000-27737600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:27734200-27736600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:27734200-27736600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:27734200-27737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:27734200-27742600	Weak transcription	Osteobl	bone
15	chr7:27734400-27737600	Weak transcription	HepG2	liver
16	chr7:27734800-27740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:27735400-27737400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:27735400-27737600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:27735400-27737600	Weak transcription	NHLF	lung
20	chr7:27736200-27737400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links