Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:27755881..27758481-chr7:27759266..27761772,2	MCF-7	breast:
2	chr7:27758786..27760428-chr7:27763695..27765220,2	K562	blood:
3	chr7:27754780..27756546-chr7:27757578..27760197,2	MCF-7	breast:
4	chr7:27754519..27756508-chr7:27757557..27759836,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11973028	0.84[EUR][1000 genomes]
rs12700836	0.81[ASN][1000 genomes]
rs17611937	0.95[ASN][1000 genomes]
rs17685046	0.97[ASN][1000 genomes]
rs2051829	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237337	0.96[ASN][1000 genomes]
rs2391486	0.84[ASN][1000 genomes]
rs34369550	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722732	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722733	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722739	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4722742	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55714615	0.98[ASN][1000 genomes]
rs56137979	0.97[ASN][1000 genomes]
rs61538692	0.97[ASN][1000 genomes]
rs62449631	0.97[ASN][1000 genomes]
rs6462056	0.81[EUR][1000 genomes]
rs6974060	0.97[ASN][1000 genomes]
rs6978847	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7785305	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7796790	0.94[ASN][1000 genomes]
rs7804317	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808062	0.94[ASN][1000 genomes]
rs960293	0.96[ASN][1000 genomes]
rs960294	0.97[ASN][1000 genomes]
rs9638847	0.97[ASN][1000 genomes]
rs9639564	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs757964	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27755200-27762200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:27755200-27762800	Weak transcription	Brain Angular Gyrus	brain
3	chr7:27756600-27762800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:27758000-27759800	Enhancers	Fetal Intestine Small	intestine
5	chr7:27758400-27762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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