Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27746088..27747969-chr7:27753217..27755020,2	MCF-7	breast:
2	chr7:27735644..27737460-chr7:27744918..27746710,2	K562	blood:

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12540821	0.83[ASN][1000 genomes]
rs12671723	0.82[CEU][hapmap]
rs12674175	1.00[CEU][hapmap]
rs12700831	0.81[CEU][hapmap]
rs13247833	0.87[EUR][1000 genomes]
rs1524527	0.81[CEU][hapmap]
rs16874305	0.89[CEU][hapmap]
rs17155465	0.89[CEU][hapmap]
rs17155705	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17155836	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17155900	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17611937	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs17685046	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs17685087	0.93[EUR][1000 genomes]
rs2051829	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs2237337	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs2893292	0.81[CEU][hapmap]
rs34369550	0.81[ASN][1000 genomes]
rs34526836	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35231440	0.84[EUR][1000 genomes]
rs35343536	0.88[EUR][1000 genomes]
rs35378468	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35645888	0.89[EUR][1000 genomes]
rs3735570	1.00[CEU][hapmap]
rs3779472	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4722732	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs4722739	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs4722742	0.81[CHB][hapmap]
rs66610237	0.88[EUR][1000 genomes]
rs6978847	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs73073391	0.89[EUR][1000 genomes]
rs757964	0.81[ASN][1000 genomes]
rs759272	0.81[CEU][hapmap]
rs7778454	0.89[CEU][hapmap]
rs7804317	0.81[ASN][1000 genomes]
rs960293	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs960294	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs9639564	0.80[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27738200-27749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:27744800-27748800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:27745000-27748600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:27745000-27748600	Weak transcription	NHDF-Ad	bronchial
5	chr7:27745000-27748800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:27745200-27748600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:27745800-27748600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:27745800-27748600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:27745800-27748600	Weak transcription	Osteobl	bone

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