Variant report

Variant	rs66610237
Chromosome Location	chr7:27829147-27829148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27828370..27830380-chr7:27831536..27833593,2	K562	blood:

Variant related genes	Relation type
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12700836	0.88[EUR][1000 genomes]
rs13247833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155705	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17155836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155900	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17685087	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34526836	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35231440	0.91[EUR][1000 genomes]
rs35343536	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35378468	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35645888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779472	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823946	0.86[AFR][1000 genomes]
rs73073391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
2	chr7:27784800-27834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:27790600-27835000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:27790600-27857400	Weak transcription	Colonic Mucosa	Colon
6	chr7:27798600-27847800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:27798600-27874000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:27801200-27851800	Weak transcription	Fetal Brain Male	brain
9	chr7:27801400-27831400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:27801400-27838400	Weak transcription	Fetal Brain Female	brain
11	chr7:27801600-27852800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:27805800-27832200	Weak transcription	Fetal Stomach	stomach
13	chr7:27805800-27857600	Weak transcription	Esophagus	oesophagus
14	chr7:27806000-27882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:27806400-27878600	Weak transcription	Right Ventricle	heart
16	chr7:27810400-27831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:27810400-27831600	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:27810800-27831600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:27811200-27832200	Weak transcription	Ovary	ovary
20	chr7:27811200-27833600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:27811400-27831200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:27811800-27831400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:27811800-27835000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:27815600-27832400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:27815600-27833200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:27815600-27874000	Weak transcription	Pancreas	Pancrea
27	chr7:27817400-27831800	Weak transcription	Brain Substantia Nigra	brain
28	chr7:27817400-27836200	Weak transcription	Psoas Muscle	Psoas
29	chr7:27818800-27834800	Weak transcription	Gastric	stomach
30	chr7:27819600-27831200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr7:27820400-27847400	Weak transcription	Fetal Heart	heart
32	chr7:27820800-27833200	Weak transcription	Brain Germinal Matrix	brain
33	chr7:27820800-27836200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:27823400-27831600	Weak transcription	Brain Anterior Caudate	brain
35	chr7:27823800-27878000	Weak transcription	Spleen	Spleen
36	chr7:27824200-27843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr7:27824200-27876800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr7:27824400-27833000	Weak transcription	A549	lung
39	chr7:27824600-27829200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:27824600-27830000	Strong transcription	Placenta	Placenta
41	chr7:27824600-27830000	Strong transcription	Dnd41	blood
42	chr7:27824600-27833400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:27824600-27836600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:27824600-27837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:27824600-27839000	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr7:27824600-27840000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr7:27824600-27842800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:27824600-27843200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr7:27824800-27829200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:27824800-27829200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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