Variant report

Variant	rs34369550
Chromosome Location	chr7:27734533-27734534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11973028	0.83[EUR][1000 genomes]
rs12700836	0.81[ASN][1000 genomes]
rs17611937	0.95[ASN][1000 genomes]
rs17685046	0.97[ASN][1000 genomes]
rs2051829	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237337	0.96[ASN][1000 genomes]
rs2391486	0.84[ASN][1000 genomes]
rs4722732	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722733	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722739	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4722742	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55714615	0.98[ASN][1000 genomes]
rs56137979	0.97[ASN][1000 genomes]
rs61538692	0.97[ASN][1000 genomes]
rs62449631	0.97[ASN][1000 genomes]
rs6974060	0.97[ASN][1000 genomes]
rs6978847	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs757964	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785305	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7796790	0.94[ASN][1000 genomes]
rs7804317	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808062	0.94[ASN][1000 genomes]
rs960293	0.96[ASN][1000 genomes]
rs960294	0.97[ASN][1000 genomes]
rs9638847	0.97[ASN][1000 genomes]
rs9639564	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34369550	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:27732000-27735400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:27733400-27735400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:27733400-27735400	Enhancers	NHLF	lung
5	chr7:27733800-27737200	Weak transcription	Primary B cells from cord blood	blood
6	chr7:27733800-27737200	Weak transcription	NHDF-Ad	bronchial
7	chr7:27733800-27737400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:27733800-27737600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:27733800-27737600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:27734000-27734800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:27734000-27736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:27734000-27736800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:27734000-27737400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:27734000-27737600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:27734200-27736600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:27734200-27736600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:27734200-27737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:27734200-27742600	Weak transcription	Osteobl	bone
19	chr7:27734400-27737600	Weak transcription	HepG2	liver

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