Variant report

Variant	rs117655144
Chromosome Location	chr19:44340889-44340890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44330286..44333165-chr19:44339420..44341971,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167637	Chromatin interaction
ENSG00000159871	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv458710	chr19:44339960-44410846	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv579853	chr19:44339960-44410846	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44332000-44344400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:44332200-44341000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:44332400-44341000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr19:44332400-44343400	Weak transcription	Stomach Mucosa	stomach
5	chr19:44332600-44341000	Weak transcription	Hela-S3	cervix
6	chr19:44332600-44342400	Strong transcription	Placenta	Placenta
7	chr19:44332800-44343000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr19:44332800-44343000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr19:44332800-44343400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr19:44332800-44348200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:44332800-44357200	ZNF genes & repeats	Liver	Liver
12	chr19:44333000-44342200	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr19:44333200-44342200	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr19:44333600-44341200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr19:44333600-44357400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:44333800-44343800	Strong transcription	Placenta Amnion	Placenta Amnion
17	chr19:44334000-44347400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr19:44334000-44353200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:44335200-44346200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:44335200-44357200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:44335200-44368200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:44335400-44341200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr19:44335400-44346000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:44335400-44357200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr19:44335400-44366600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr19:44336400-44342600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
27	chr19:44336400-44342600	Strong transcription	Right Ventricle	heart
28	chr19:44336600-44342000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:44336600-44342600	ZNF genes & repeats	Fetal Kidney	kidney
30	chr19:44336600-44357600	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr19:44336800-44341000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr19:44336800-44342800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
33	chr19:44336800-44353000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr19:44336800-44356800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr19:44336800-44357200	ZNF genes & repeats	Fetal Lung	lung
36	chr19:44337200-44347800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr19:44337800-44342400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr19:44337800-44342600	Strong transcription	HSMMtube	muscle
39	chr19:44337800-44347600	ZNF genes & repeats	Fetal Muscle Leg	muscle
40	chr19:44338000-44349600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
41	chr19:44338000-44352800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:44338200-44341200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr19:44338400-44341000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr19:44338600-44342800	ZNF genes & repeats	Lung	lung
45	chr19:44338800-44341000	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr19:44338800-44342400	Strong transcription	Thymus	Thymus
47	chr19:44339000-44341200	Strong transcription	Brain Cingulate Gyrus	brain
48	chr19:44339000-44341400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr19:44339000-44343000	ZNF genes & repeats	Fetal Intestine Small	intestine
50	chr19:44339000-44349600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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