Variant report

Variant	nsv579853
Chromosome Location	chr19:44339960-44410846
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:404)
CpG islands
(count:550)
Chromatin interactive
region (count:29)
LncRNA
region (count:33)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:404 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr19:44405758-44406139	K562	blood:	n/a	n/a
2	BACH1	chr19:44405876-44406130	H1-hESC	embryonic stem cell:	n/a	n/a
3	BCLAF1	chr19:44405565-44406127	GM12878	blood:	n/a	n/a
4	BHLHE40	chr19:44405567-44406168	GM12878	blood:	n/a	n/a
5	BHLHE40	chr19:44405664-44406252	K562	blood:	n/a	n/a
6	CBX3	chr19:44405522-44406373	K562	blood:	n/a	n/a
7	CBX3	chr19:44405812-44406422	K562	blood:	n/a	n/a
8	CEBPB	chr19:44398945-44399244	A549	lung:	n/a	chr19:44399088-44399099
9	CEBPB	chr19:44398950-44399239	HepG2	liver:	n/a	chr19:44399088-44399099
10	CEBPB	chr19:44384623-44384987	A549	lung:	n/a	chr19:44384810-44384821
11	CEBPB	chr19:44398931-44399234	Hela-S3	cervix:	n/a	chr19:44399088-44399099
12	CEBPB	chr19:44400101-44400351	IMR90	lung:	n/a	chr19:44400247-44400258
13	CEBPB	chr19:44400087-44400382	HepG2	liver:	n/a	chr19:44400247-44400258
14	CEBPB	chr19:44384650-44384979	H1-hESC	embryonic stem cell:	n/a	chr19:44384810-44384821
15	CEBPB	chr19:44400096-44400372	A549	lung:	n/a	chr19:44400247-44400258
16	CEBPB	chr19:44352006-44352419	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr19:44384637-44385005	K562	blood:	n/a	chr19:44384810-44384821
18	CEBPB	chr19:44384633-44385003	IMR90	lung:	n/a	chr19:44384810-44384821
19	CEBPB	chr19:44384682-44385043	MCF-7	breast:	n/a	chr19:44384810-44384821
20	CEBPB	chr19:44372653-44373190	HepG2	liver:	n/a	chr19:44373147-44373158
21	CEBPB	chr19:44406009-44406568	K562	blood:	n/a	chr19:44406441-44406452
22	CEBPB	chr19:44400196-44400348	K562	blood:	n/a	chr19:44400247-44400258
23	CEBPB	chr19:44376573-44377716	Hela-S3	cervix:	n/a	n/a
24	CEBPB	chr19:44400078-44400425	Hela-S3	cervix:	n/a	chr19:44400247-44400258
25	CEBPB	chr19:44384540-44385089	A549	lung:	n/a	chr19:44384810-44384821 chr19:44384550-44384562
26	CEBPB	chr19:44384644-44384943	ECC-1	luminal epithelium:	n/a	chr19:44384810-44384821
27	CEBPB	chr19:44398931-44399269	IMR90	lung:	n/a	chr19:44399088-44399099
28	CEBPB	chr19:44372698-44372792	K562	blood:	n/a	n/a
29	CEBPB	chr19:44384635-44385004	A549	lung:	n/a	chr19:44384810-44384821
30	CEBPB	chr19:44384631-44385005	HepG2	liver:	n/a	chr19:44384810-44384821
31	CEBPB	chr19:44406330-44406569	HepG2	liver:	n/a	chr19:44406441-44406452
32	CEBPB	chr19:44373015-44373294	IMR90	lung:	n/a	chr19:44373147-44373158
33	CEBPB	chr19:44391806-44391934	A549	lung:	n/a	n/a
34	CEBPB	chr19:44384671-44384996	Hela-S3	cervix:	n/a	chr19:44384810-44384821
35	CEBPB	chr19:44384675-44384923	ECC-1	luminal epithelium:	n/a	chr19:44384810-44384821
36	CEBPB	chr19:44345196-44345263	A549	lung:	n/a	n/a
37	CEBPB	chr19:44373051-44373234	K562	blood:	n/a	chr19:44373147-44373158
38	CHD2	chr19:44405768-44406085	K562	blood:	n/a	n/a
39	CHD2	chr19:44405513-44406241	GM12878	blood:	n/a	n/a
40	CHD2	chr19:44405879-44406108	HepG2	liver:	n/a	n/a
41	CREB1	chr19:44405766-44406101	A549	lung:	n/a	n/a
42	CTCF	chr19:44359640-44359790	MCF-7	breast:	n/a	chr19:44359685-44359693
43	CTCF	chr19:44409740-44409890	HEK293	kidney:	n/a	n/a
44	CTCF	chr19:44405880-44406030	AG09319	gingival:	n/a	n/a
45	CTCF	chr19:44405780-44405930	AG04449	skin:	n/a	n/a
46	CTCF	chr19:44344600-44344750	HEK293	kidney:	n/a	n/a
47	CTCF	chr19:44405929-44406014	Spleen_OC	spleen:	n/a	n/a
48	CTCF	chr19:44353060-44353210	RPTEC	kidney:	n/a	n/a
49	CTCF	chr19:44405880-44406030	HCPEpiC	choroid plexus:	n/a	n/a
50	CUX1	chr19:44405746-44406221	GM12878	blood:	n/a	n/a

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:44406241-44406291	SK-N-SH_RA	brain:	n/a
2	chr19:44406241-44406291	SK-N-SH_RA	brain:	n/a
3	chr19:44406241-44406291	PrEC	prostate:	n/a
4	chr19:44405433-44405483	NHBE	bronchial:	n/a
5	chr19:44342834-44342884	SKMC	muscle:	n/a
6	chr19:44405433-44405483	Hepatocyte	liver:	n/a
7	chr19:44406241-44406291	NT2-D1	testis:	n/a
8	chr19:44342834-44342884	HepG2	liver:	n/a
9	chr19:44405998-44406048	NHDF-neo	bronchial:	n/a
10	chr19:44405433-44405483	ProgFib	skin:	n/a
11	chr19:44384270-44384320	HRPEpiC	eye:	n/a
12	chr19:44405433-44405483	CMK	blood:	n/a
13	chr19:44405998-44406048	K562	blood:	n/a
14	chr19:44406241-44406291	MCF10A-Er-Src	breast:	n/a
15	chr19:44405818-44405868	HRE	kidney:	n/a
16	chr19:44405998-44406048	H1-hESC	embryonic stem cell:	embryo
17	chr19:44408232-44408282	BJ	skin:	n/a
18	chr19:44405998-44406048	IMR90	lung:	fetal
19	chr19:44405998-44406048	HRE	kidney:	n/a
20	chr19:44384270-44384320	BE2_C	brain:	n/a
21	chr19:44405924-44405974	PANC-1	pancreas:	n/a
22	chr19:44406241-44406291	HEK293	kidney:	embryo
23	chr19:44342834-44342884	PFSK-1	brain:	n/a
24	chr19:44405924-44405974	HRE	kidney:	n/a
25	chr19:44405924-44405974	AG09309	skin:	n/a
26	chr19:44405818-44405868	T-47D	breast:	n/a
27	chr19:44384646-44384696	BE2_C	brain:	n/a
28	chr19:44406241-44406291	SK-N-MC	brain:	n/a
29	chr19:44406241-44406291	AoSMC	blood vessel:	n/a
30	chr19:44342834-44342884	HCT-116	colon:	n/a
31	chr19:44405998-44406048	BE2_C	brain:	n/a
32	chr19:44384270-44384320	Caco-2	colon:	n/a
33	chr19:44384646-44384696	U87	brain:	n/a
34	chr19:44405924-44405974	NHBE	bronchial:	n/a
35	chr19:44384270-44384320	GM12891	blood:	n/a
36	chr19:44405433-44405483	HRE	kidney:	n/a
37	chr19:44405433-44405483	A549	lung:	n/a
38	chr19:44384270-44384320	U87	brain:	n/a
39	chr19:44405998-44406048	SK-N-SH	brain:	n/a
40	chr19:44408232-44408282	ProgFib	skin:	n/a
41	chr19:44384270-44384320	Jurkat	blood:	n/a
42	chr19:44342834-44342884	GM12892	blood:	n/a
43	chr19:44384270-44384320	AG09309	skin:	n/a
44	chr19:44384270-44384320	BJ	skin:	n/a
45	chr19:44408232-44408282	Jurkat	blood:	n/a
46	chr19:44405924-44405974	HNPCEpiC	eye:	n/a
47	chr19:44405998-44406048	HCF	heart:	n/a
48	chr19:44384646-44384696	HNPCEpiC	eye:	n/a
49	chr19:44342834-44342884	GM12891	blood:	n/a
50	chr19:44342834-44342884	MCF10A-Er-Src	breast:	n/a

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:44342723..44344793-chr19:44350333..44352152,2	K562	blood:
2	chr19:44410719..44412608-chr19:44644155..44647042,2	K562	blood:
3	chr19:44342723..44344793-chr19:44350333..44352152,2	K562	blood:
4	chr19:44399167..44400668-chr19:44417596..44419983,2	K562	blood:
5	chr19:44346181..44347972-chr19:44350637..44353162,2	K562	blood:
6	chr19:44352671..44354386-chr19:44358392..44361083,2	MCF-7	breast:
7	chr19:44405165..44406844-chr19:44438913..44440753,2	K562	blood:
8	chr19:44341536..44343816-chr19:44343993..44346090,2	K562	blood:
9	chr19:44410509..44412802-chr19:44414886..44417427,2	K562	blood:
10	chr19:44406146..44408991-chr19:44410315..44412049,2	MCF-7	breast:
11	chr19:44355034..44358030-chr19:44358600..44360589,3	K562	blood:
12	chr14:50470505..50471181-chr19:44358025..44358525,2	HCT-116	colon:
13	chr19:44361768..44363729-chr19:44402650..44405241,2	K562	blood:
14	chr19:44361768..44363729-chr19:44402650..44405241,2	K562	blood:
15	chr19:44341536..44343586-chr19:44343855..44345493,2	K562	blood:
16	chr19:44341536..44343586-chr19:44343855..44345493,2	K562	blood:
17	chr19:44398114..44400925-chr19:44404396..44406341,2	K562	blood:
18	chr19:44352671..44354386-chr19:44358392..44361083,2	MCF-7	breast:
19	chr19:44341675..44344462-chr19:44346116..44348112,2	K562	blood:
20	chr19:44341675..44344462-chr19:44346116..44348112,2	K562	blood:
21	chr19:44397059..44399514-chr19:44401601..44405837,4	MCF-7	breast:
22	chr19:44341545..44343672-chr19:44355013..44357623,2	K562	blood:
23	chr19:44330286..44333165-chr19:44339420..44341971,2	MCF-7	breast:
24	chr19:44346181..44347972-chr19:44350637..44353162,2	K562	blood:
25	chr19:44355034..44358030-chr19:44358600..44360589,3	K562	blood:
26	chr19:44341545..44343672-chr19:44355013..44357623,2	K562	blood:
27	chr19:44325529..44327372-chr19:44349912..44351479,2	K562	blood:
28	chr19:44341536..44343816-chr19:44343993..44346090,2	K562	blood:
29	chr19:44410043..44412802-chr19:44414886..44416550,2	K562	blood:

(count:33 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF404-1	chr19:44405189-44405957	ENSG00000247377
2	lnc-ZNF404-1	chr19:44384598-44384826	NONHSAT066635
3	lnc-ZNF404-1	chr19:44395956-44397292	NR_038334
4	lnc-ZNF404-1	chr19:44405189-44405949	XLOC_013350
5	lnc-ZNF404-1	chr19:44405020-44405106	ENSG00000267058.1
6	lnc-ZNF404-1	chr19:44387820-44388203	XLOC_013350
7	lnc-IRGC-4	chr19:44351092-44351486	NONHSAT066634
8	lnc-IRGC-4	chr19:44341247-44341331	NONHSAT066634
9	lnc-ZNF221-2	chr19:44406153-44406296	ENSG00000267191.1
10	lnc-ZNF404-1	chr19:44387971-44388203	XLOC_013350
11	lnc-ZNF404-1	chr19:44405189-44405537	NONHSAT066636
12	lnc-ZNF404-1	chr19:44405020-44405106	NONHSAT066636
13	lnc-ZNF404-1	chr19:44405189-44405957	ENSG00000267058.1
14	lnc-ZNF404-1	chr19:44395957-44397292	XLOC_013350
15	lnc-ZNF404-1	chr19:44405189-44405703	XLOC_013350
16	lnc-ZNF404-1	chr19:44405189-44405955	NR_038334
17	lnc-ZNF404-1	chr19:44405070-44405106	ENSG00000267058.1
18	lnc-ZNF404-1	chr19:44405020-44405106	XLOC_013350
19	lnc-ZNF404-1	chr19:44405197-44405663	ENSG00000267058.1
20	lnc-ZNF404-1	chr19:44395956-44397292	ENSG00000267058.1
21	lnc-ZNF404-1	chr19:44405020-44405837	XLOC_013350
22	lnc-ZNF404-1	chr19:44388162-44388203	XLOC_013350
23	lnc-ZNF404-1	chr19:44405020-44405106	ENSG00000247377
24	lnc-ZNF404-1	chr19:44385792-44385890	NONHSAT066636
25	lnc-ZNF404-1	chr19:44405189-44405873	NONHSAT066641
26	lnc-ZNF404-1	chr19:44405109-44405135	NONHSAT066641
27	lnc-ZNF404-1	chr19:44395957-44397292	ENSG00000247377
28	lnc-ZNF404-1	chr19:44385774-44385960	NONHSAT066635
29	lnc-ZNF404-1	chr19:44405197-44405994	XLOC_013350
30	lnc-ZNF404-1	chr19:44405020-44405106	NR_038334
31	lnc-ZNF404-1	chr19:44405020-44405106	XLOC_013350
32	lnc-ZNF404-1	chr19:44388108-44388203	NONHSAT066636
33	lnc-ZNF404-1	chr19:44405020-44405106	XLOC_013350

No data

Variant related genes	Relation type
ENSG00000267191	TF binding region
ENSG00000267058	TF binding region
ZNF404	TF binding region
ENSG00000267191	CpG island
ENSG00000267058	CpG island
ZNF404	CpG island
ENSG00000267058	chromatin interactions
ENSG00000167637	chromatin interactions
ENSG00000124459	chromatin interactions
ENSG00000159871	chromatin interactions
ENSG00000267191	chromatin interactions
ENSG00000176222	chromatin interactions
ENSG00000263002	chromatin interactions
RBM12B	miRNA target sites
SLMAP	miRNA target sites
SEL1L3	miRNA target sites
RBL2	miRNA target sites
MREG	miRNA target sites

Extended variants
information (count: 2356 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:2356 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs349036	chr19:44339960-44339961	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs190310874	chr19:44340066-44340067	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs560163095	chr19:44340121-44340122	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs529182493	chr19:44340157-44340158	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs181869130	chr19:44340180-44340181	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs187366905	chr19:44340216-44340217	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs531333360	chr19:44340220-44340221	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs551147057	chr19:44340233-44340234	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs571332584	chr19:44340287-44340288	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs370179192	chr19:44340364-44340365	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs190537953	chr19:44340482-44340483	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs7248346	chr19:44340520-44340521	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs180705358	chr19:44340556-44340557	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs141772750	chr19:44340558-44340559	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs556487224	chr19:44340562-44340563	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs145609321	chr19:44340563-44340564	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs377272709	chr19:44340596-44340597	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs557159512	chr19:44340606-44340607	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs539032637	chr19:44340678-44340679	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs185086170	chr19:44340745-44340746	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs572528194	chr19:44340771-44340772	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs189993397	chr19:44340828-44340829	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs117655144	chr19:44340889-44340890	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs181246895	chr19:44340944-44340945	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs532126996	chr19:44340960-44340961	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs57724096	chr19:44340966-44340967	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs562778496	chr19:44340985-44340986	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs185606280	chr19:44340986-44340987	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs545008008	chr19:44341008-44341009	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs191748367	chr19:44341017-44341018	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs527364585	chr19:44341081-44341082	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs547215550	chr19:44341090-44341091	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs369988269	chr19:44341092-44341093	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs543906771	chr19:44341096-44341097	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs78938003	chr19:44341165-44341166	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs183628099	chr19:44341177-44341178	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs189019805	chr19:44341184-44341185	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs377544306	chr19:44341186-44341187	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs202229055	chr19:44341187-44341188	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs370983131	chr19:44341207-44341208	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs199848094	chr19:44341247-44341248	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs367553149	chr19:44341251-44341252	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs562270667	chr19:44341260-44341261	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
44	rs145411708	chr19:44341288-44341289	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
45	rs201943823	chr19:44341305-44341306	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs200980282	chr19:44341308-44341309	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs372244918	chr19:44341325-44341326	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
48	rs570030544	chr19:44341328-44341329	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs16976817	chr19:44341340-44341341	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs191997803	chr19:44341421-44341422	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Astrocytoma	22246337	CNVD
Ovarian cancer	22174824	CNVD
Cancer	20164920	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	20800559	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Spondylocostal dysostosis	21085971	CNVD
Nicotine metabolism	21956041	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	16750200	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1355 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44332000-44344400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:44332200-44340400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr19:44332200-44341000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:44332400-44341000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:44332400-44343400	Weak transcription	Stomach Mucosa	stomach
6	chr19:44332600-44340400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr19:44332600-44341000	Weak transcription	Hela-S3	cervix
8	chr19:44332600-44342400	Strong transcription	Placenta	Placenta
9	chr19:44332800-44343000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:44332800-44343000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:44332800-44343400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr19:44332800-44348200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:44332800-44357200	ZNF genes & repeats	Liver	Liver
14	chr19:44333000-44342200	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr19:44333200-44342200	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr19:44333600-44340000	Strong transcription	NHDF-Ad	bronchial
17	chr19:44333600-44341200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:44333600-44357400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:44333800-44343800	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr19:44334000-44347400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr19:44334000-44353200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:44335200-44346200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr19:44335200-44357200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr19:44335200-44368200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:44335400-44340600	Strong transcription	Left Ventricle	heart
26	chr19:44335400-44341200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:44335400-44346000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:44335400-44357200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr19:44335400-44366600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr19:44336400-44342600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
31	chr19:44336400-44342600	Strong transcription	Right Ventricle	heart
32	chr19:44336600-44342000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:44336600-44342600	ZNF genes & repeats	Fetal Kidney	kidney
34	chr19:44336600-44357600	ZNF genes & repeats	Adipose Nuclei	Adipose
35	chr19:44336800-44340000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:44336800-44341000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr19:44336800-44342800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr19:44336800-44353000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr19:44336800-44356800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
40	chr19:44336800-44357200	ZNF genes & repeats	Fetal Lung	lung
41	chr19:44337200-44347800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
42	chr19:44337800-44342400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr19:44337800-44342600	Strong transcription	HSMMtube	muscle
44	chr19:44337800-44347600	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr19:44338000-44340600	Strong transcription	K562	blood
46	chr19:44338000-44349600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
47	chr19:44338000-44352800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr19:44338200-44340800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr19:44338200-44341200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:44338400-44341000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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