Variant report

Variant	rs11765998
Chromosome Location	chr7:78208429-78208430
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10264204	0.84[EUR][1000 genomes]
rs17373046	0.91[ASN][1000 genomes]
rs17439220	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2192659	0.84[EUR][1000 genomes]
rs319870	0.86[AFR][1000 genomes]
rs62468646	0.91[ASN][1000 genomes]
rs62468647	0.91[ASN][1000 genomes]
rs62468648	0.91[ASN][1000 genomes]
rs62468649	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468650	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62468651	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78193200-78209000	Weak transcription	Psoas Muscle	Psoas
2	chr7:78198400-78216000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:78205400-78211600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:78205400-78211600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:78205600-78209000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:78207000-78209000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:78207600-78208800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:78207600-78208800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:78207600-78209200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:78207600-78209800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:78207600-78210400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:78208000-78208600	Enhancers	Brain Hippocampus Middle	brain
13	chr7:78208000-78209000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:78208000-78210600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:78208200-78208600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr7:78208200-78208600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:78208200-78209000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr7:78208200-78209800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:78208200-78210200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:78208400-78208800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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