Variant report

Variant	rs62468651
Chromosome Location	chr7:78213846-78213847
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10264204	0.83[EUR][1000 genomes]
rs11765998	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17439220	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2192659	0.83[EUR][1000 genomes]
rs319870	0.86[AFR][1000 genomes]
rs62468649	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62468650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78198400-78216000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:78209000-78219000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:78209800-78217200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:78209800-78217400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:78209800-78219600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:78210400-78217600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:78210600-78219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:78210800-78217200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:78210800-78217200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:78211600-78217000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:78211600-78217200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:78211600-78217800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:78211600-78217800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:78212000-78217800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:78213800-78214800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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