Variant report

Variant	rs11766837
Chromosome Location	chr7:70777984-70777985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11760742	0.81[EUR][1000 genomes]
rs11763372	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17628870	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4717591	0.83[AMR][1000 genomes]
rs55690472	0.86[AMR][1000 genomes]
rs6972973	0.81[EUR][1000 genomes]
rs7792219	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7811093	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70773600-70778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:70773600-70778400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70773600-70778400	Weak transcription	Fetal Lung	lung
7	chr7:70773800-70778200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:70773800-70778400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:70774000-70779800	Weak transcription	Fetal Stomach	stomach
10	chr7:70774400-70778400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:70777000-70778000	Enhancers	Ovary	ovary
12	chr7:70777000-70778200	Weak transcription	Brain Anterior Caudate	brain
13	chr7:70777000-70778400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:70777200-70778000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:70777400-70778000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:70777400-70778400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:70777600-70778200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:70777600-70779000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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