Variant report

Variant	rs55690472
Chromosome Location	chr7:70772565-70772566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11760742	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11766837	0.86[AMR][1000 genomes]
rs11771662	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17628870	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34822312	0.85[AMR][1000 genomes]
rs4717591	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6972973	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6974603	0.91[ASN][1000 genomes]
rs7790268	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:70769000-70772800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:70769200-70772600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:70769200-70772800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:70769200-70772800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70769200-70773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70769400-70772600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:70769400-70772600	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:70769400-70772800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:70769400-70772800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:70769400-70772800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:70769600-70773000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:70769600-70773000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:70769600-70773000	Weak transcription	Fetal Lung	lung
17	chr7:70769600-70773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:70770800-70772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:70770800-70772800	Weak transcription	Ovary	ovary
20	chr7:70772200-70772600	Enhancers	HSMMtube	muscle
21	chr7:70772200-70773200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:70772200-70773800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:70772200-70774200	Enhancers	Fetal Heart	heart
24	chr7:70772200-70774400	Enhancers	Rectal Smooth Muscle	rectum
25	chr7:70772200-70774400	Enhancers	HSMM	muscle
26	chr7:70772400-70772600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:70772400-70772800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:70772400-70773000	Enhancers	Aorta	Aorta
29	chr7:70772400-70773600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:70772400-70773600	Enhancers	Brain Anterior Caudate	brain
31	chr7:70772400-70773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr7:70772400-70774400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:70772400-70774400	Enhancers	Fetal Muscle Leg	muscle
34	chr7:70772400-70774400	Enhancers	NH-A	brain

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