Variant report

Variant	rs6974603
Chromosome Location	chr7:70765656-70765657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr7:70765616-70765901	HepG2	liver:	n/a	n/a
2	FOXA1	chr7:70765617-70765958	HepG2	liver:	n/a	n/a
3	HNF4A	chr7:70765656-70765933	HepG2	liver:	n/a	n/a
4	FOXA1	chr7:70765507-70765945	HepG2	liver:	n/a	n/a
5	FOXA2	chr7:70765618-70765912	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
WBSCR17	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10262128	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11760742	1.00[CHB][hapmap]
rs11768233	0.82[CHB][hapmap]
rs13240200	1.00[CHB][hapmap]
rs1544441	0.82[CHB][hapmap]
rs1544443	0.82[CHB][hapmap]
rs17628870	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1922526	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2527313	0.82[CHB][hapmap]
rs2707425	1.00[CHB][hapmap]
rs2707433	1.00[CHB][hapmap]
rs3923042	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4717591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4719108	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55690472	0.91[ASN][1000 genomes]
rs59753402	0.87[EUR][1000 genomes]
rs6972584	0.88[EUR][1000 genomes]
rs6976905	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7790268	1.00[ASN][1000 genomes]
rs7806503	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751200-70768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70751800-70768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:70764000-70768800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70765000-70765800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:70765000-70766000	Enhancers	Fetal Muscle Trunk	muscle
8	chr7:70765000-70766200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:70765000-70766200	Enhancers	Fetal Muscle Leg	muscle
10	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:70765200-70765800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70765200-70765800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:70765200-70765800	Enhancers	Fetal Heart	heart
14	chr7:70765200-70765800	Enhancers	Fetal Lung	lung
15	chr7:70765200-70765800	Enhancers	HSMMtube	muscle
16	chr7:70765200-70766000	Enhancers	HepG2	liver
17	chr7:70765400-70765800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:70765400-70765800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:70765400-70765800	Enhancers	Fetal Stomach	stomach
20	chr7:70765400-70765800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:70765400-70766000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr7:70765600-70766000	Active TSS	Colon Smooth Muscle	Colon
23	chr7:70765600-70766000	Flanking Active TSS	Ovary	ovary
24	chr7:70765600-70766000	Enhancers	Spleen	Spleen
25	chr7:70765600-70766200	Enhancers	Left Ventricle	heart
26	chr7:70765600-70766200	Enhancers	Pancreas	Pancrea
27	chr7:70765600-70768200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:70765600-70768400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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