Variant report

Variant	rs2527313
Chromosome Location	chr7:70814412-70814413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10267677	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11760742	0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11768233	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770205	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771662	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13240200	0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628870	0.83[EUR][1000 genomes]
rs2107795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527286	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2527300	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2707425	0.82[CHB][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707433	0.82[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34445434	0.80[EUR][1000 genomes]
rs34822312	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35964468	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4717591	0.82[CHB][hapmap]
rs4719115	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6952259	0.84[ASN][1000 genomes]
rs6972973	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6974603	0.82[CHB][hapmap]
rs7803720	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70812400-70815400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:70812600-70814600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:70812600-70814600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70812600-70814800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:70813200-70814600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr7:70813200-70814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:70813400-70814600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:70813400-70814600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:70813400-70814800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:70813400-70814800	Enhancers	Fetal Muscle Leg	muscle
11	chr7:70813600-70814800	Enhancers	Fetal Brain Female	brain
12	chr7:70813600-70814800	Enhancers	Fetal Stomach	stomach
13	chr7:70813600-70815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:70813800-70814600	Active TSS	Colon Smooth Muscle	Colon
15	chr7:70813800-70814600	Flanking Active TSS	Fetal Brain Male	brain
16	chr7:70813800-70814800	Active TSS	Stomach Smooth Muscle	stomach
17	chr7:70813800-70815000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:70813800-70815000	Enhancers	Fetal Heart	heart
19	chr7:70814000-70814600	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr7:70814000-70814800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:70814000-70814800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:70814000-70814800	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr7:70814000-70814800	Active TSS	Pancreas	Pancrea
24	chr7:70814200-70814600	Flanking Active TSS	Fetal Lung	lung
25	chr7:70814200-70814600	Active TSS	Ovary	ovary
26	chr7:70814200-70814800	Active TSS	Rectal Smooth Muscle	rectum
27	chr7:70814400-70814600	Enhancers	Fetal Kidney	kidney
28	chr7:70814400-70814800	Enhancers	Brain Germinal Matrix	brain
29	chr7:70814400-70815600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:70814400-70816200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links