Variant report

Variant	rs11768233
Chromosome Location	chr7:70800900-70800901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10267677	0.95[EUR][1000 genomes]
rs11760742	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11770205	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771662	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13240200	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544441	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1544443	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17628870	0.91[CEU][hapmap];0.95[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs1922526	0.86[GIH][hapmap]
rs2107795	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527286	0.92[EUR][1000 genomes]
rs2527300	0.83[EUR][1000 genomes]
rs2527313	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707425	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707433	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707438	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34445434	0.82[EUR][1000 genomes]
rs34822312	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35964468	0.85[EUR][1000 genomes]
rs4717591	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap]
rs4719115	0.93[EUR][1000 genomes]
rs6944999	0.81[ASW][hapmap]
rs6952259	0.84[ASN][1000 genomes]
rs6972973	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6974603	0.82[CHB][hapmap]
rs6976905	0.83[GIH][hapmap]
rs7792469	1.00[JPT][hapmap]
rs7803720	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11768233	NFKBIZ	trans	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:70793600-70802200	Weak transcription	Left Ventricle	heart
4	chr7:70794400-70801400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:70794400-70801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70794600-70801400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:70794600-70801400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:70794600-70801400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:70794800-70801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:70794800-70804800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:70796000-70804200	Weak transcription	Ovary	ovary
13	chr7:70799400-70805000	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:70799600-70804800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70800000-70801400	Weak transcription	Fetal Lung	lung
16	chr7:70800600-70802200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:70800600-70802200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:70800800-70802000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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