Variant report

Variant	rs6944999
Chromosome Location	chr7:70799863-70799864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10265527	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10807731	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs10950257	0.92[CEU][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10950258	0.92[EUR][1000 genomes]
rs11760210	0.91[EUR][1000 genomes]
rs11768233	0.81[ASW][hapmap]
rs11970929	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12154870	0.92[CEU][hapmap]
rs12154884	0.97[EUR][1000 genomes]
rs12155133	0.81[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12155139	0.95[EUR][1000 genomes]
rs12155368	0.81[JPT][hapmap]
rs12155491	0.92[EUR][1000 genomes]
rs12155498	0.91[EUR][1000 genomes]
rs12666581	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12669906	0.91[EUR][1000 genomes]
rs12673556	0.81[JPT][hapmap]
rs13240200	0.81[ASW][hapmap]
rs1465231	0.81[JPT][hapmap]
rs1558003	0.81[JPT][hapmap]
rs1574440	0.81[JPT][hapmap]
rs1922513	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs1950148	0.93[GIH][hapmap]
rs2091792	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs2107798	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2107800	0.96[EUR][1000 genomes]
rs2141885	0.81[JPT][hapmap]
rs2527289	0.81[JPT][hapmap]
rs2527294	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs2527297	0.81[JPT][hapmap]
rs2527298	0.81[JPT][hapmap]
rs2527310	0.95[GIH][hapmap]
rs2527312	0.81[JPT][hapmap]
rs2707432	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs3973938	0.84[CEU][hapmap];0.97[EUR][1000 genomes]
rs4073529	0.80[JPT][hapmap]
rs4270841	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4283926	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4445102	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs4446620	0.81[JPT][hapmap]
rs4584034	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs4719110	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4719111	0.91[EUR][1000 genomes]
rs4719113	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs4719114	0.94[EUR][1000 genomes]
rs4719116	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs6460650	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6460651	0.96[EUR][1000 genomes]
rs6460652	0.96[EUR][1000 genomes]
rs6460653	0.92[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6954049	0.89[EUR][1000 genomes]
rs6967666	0.84[EUR][1000 genomes]
rs6976592	0.96[EUR][1000 genomes]
rs7385083	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7776752	0.92[EUR][1000 genomes]
rs7778324	0.81[JPT][hapmap]
rs7787338	0.92[EUR][1000 genomes]
rs7787933	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs7788793	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs7797409	0.90[EUR][1000 genomes]
rs9638620	0.89[GIH][hapmap]
rs9986885	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:70793600-70802200	Weak transcription	Left Ventricle	heart
4	chr7:70794000-70800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70794400-70801400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:70794400-70801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:70794600-70800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:70794600-70800800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:70794600-70801400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:70794600-70801400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:70794600-70801400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:70794800-70801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:70794800-70804800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:70796000-70804200	Weak transcription	Ovary	ovary
16	chr7:70799400-70800000	Enhancers	Fetal Lung	lung
17	chr7:70799400-70805000	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:70799600-70804800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links