Variant report

Variant	rs10950257
Chromosome Location	chr7:70784418-70784419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10246940	0.91[JPT][hapmap]
rs10265527	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs10268327	0.95[JPT][hapmap]
rs10271589	0.95[JPT][hapmap]
rs10807731	0.93[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.95[EUR][1000 genomes]
rs10950258	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11760210	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12154870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12154884	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12155133	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12155139	0.93[EUR][1000 genomes]
rs12155491	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155498	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12666581	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12669906	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1317290	0.82[GIH][hapmap];0.95[JPT][hapmap]
rs1317429	0.82[GIH][hapmap];0.95[JPT][hapmap]
rs1317892	0.95[JPT][hapmap]
rs17143199	0.91[JPT][hapmap]
rs1922513	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1950148	0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap]
rs2091792	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2107796	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2107797	0.95[JPT][hapmap]
rs2107798	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2107800	0.94[EUR][1000 genomes]
rs2527294	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs2527310	0.89[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap]
rs2707432	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs3973938	0.92[CEU][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[EUR][1000 genomes]
rs4270841	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4283926	0.81[EUR][1000 genomes]
rs4445102	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs4520056	0.84[JPT][hapmap]
rs4584034	1.00[CEU][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs4719104	0.84[GIH][hapmap];0.91[JPT][hapmap]
rs4719106	0.95[JPT][hapmap]
rs4719107	0.95[JPT][hapmap]
rs4719110	0.92[CEU][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4719111	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719113	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs4719114	0.92[EUR][1000 genomes]
rs4719116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4719117	0.91[JPT][hapmap]
rs6460650	0.92[CEU][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs6460651	0.95[EUR][1000 genomes]
rs6460652	0.95[EUR][1000 genomes]
rs6460653	1.00[CEU][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.95[EUR][1000 genomes]
rs6944999	0.92[CEU][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs6954049	0.87[EUR][1000 genomes]
rs6967666	0.82[EUR][1000 genomes]
rs6976592	0.95[EUR][1000 genomes]
rs7385083	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7776752	0.87[EUR][1000 genomes]
rs7787338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7787933	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.95[EUR][1000 genomes]
rs7788793	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs7797409	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9638616	0.91[JPT][hapmap]
rs9638620	0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap]
rs9654908	0.95[JPT][hapmap]
rs9986885	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70780800-70789200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:70782400-70787400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70783200-70785200	Weak transcription	HSMMtube	muscle
7	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
8	chr7:70784400-70785000	Enhancers	Brain Anterior Caudate	brain

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