Variant report

Variant	rs2107796
Chromosome Location	chr7:70808650-70808651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70803643..70805541-chr7:70808294..70809904,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10230586	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10246940	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs10265527	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10267524	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10268327	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10271589	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10807731	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10950257	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10950258	0.89[ASN][1000 genomes]
rs11760210	0.87[ASN][1000 genomes]
rs11761703	0.98[EUR][1000 genomes]
rs11768963	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12154870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12155133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs12155491	0.90[ASN][1000 genomes]
rs12155498	0.89[ASN][1000 genomes]
rs12534549	0.88[EUR][1000 genomes]
rs12669906	0.87[ASN][1000 genomes]
rs1317290	0.88[JPT][hapmap]
rs1317429	0.88[JPT][hapmap]
rs1317892	0.89[JPT][hapmap]
rs17143199	0.95[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs1922513	1.00[ASN][1000 genomes]
rs1950148	0.95[CEU][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs2091792	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2107797	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2107798	0.96[ASN][1000 genomes]
rs2107800	0.80[ASN][1000 genomes]
rs2158609	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2527294	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2527308	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2527310	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs2527314	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2707432	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs28392825	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28588236	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28664864	0.83[EUR][1000 genomes]
rs28678480	0.91[EUR][1000 genomes]
rs3973938	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4445102	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4520056	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4584034	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4719104	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs4719106	0.88[JPT][hapmap]
rs4719107	0.89[JPT][hapmap]
rs4719111	0.91[ASN][1000 genomes]
rs4719113	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4719114	0.80[ASN][1000 genomes]
rs4719116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4719117	1.00[CEU][hapmap];0.89[JPT][hapmap];0.98[EUR][1000 genomes]
rs57442026	0.88[EUR][1000 genomes]
rs6460653	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs73181630	0.99[EUR][1000 genomes]
rs7385083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs7787338	0.89[ASN][1000 genomes]
rs7787933	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7788793	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7791195	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7797409	0.87[ASN][1000 genomes]
rs9638616	0.83[JPT][hapmap]
rs9638620	0.95[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs9654908	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70801600-70812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:70805000-70813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70805200-70813400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70805400-70809400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70805600-70813200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:70805600-70813200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:70807000-70812600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:70807400-70810200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:70808200-70813400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:70808600-70813800	Weak transcription	Fetal Brain Male	brain

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