Variant report

Variant	rs4445102
Chromosome Location	chr7:70802011-70802012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10230586	1.00[ASN][1000 genomes]
rs10238960	0.82[CHB][hapmap]
rs10246940	0.84[JPT][hapmap]
rs10265527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267524	1.00[ASN][1000 genomes]
rs10268327	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10271589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10807731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10950257	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs10950258	0.93[EUR][1000 genomes]
rs11760210	0.92[EUR][1000 genomes]
rs11761703	0.96[ASN][1000 genomes]
rs11768963	1.00[ASN][1000 genomes]
rs12154870	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12154884	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12155133	0.87[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12155139	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12155491	0.93[EUR][1000 genomes]
rs12155498	0.92[EUR][1000 genomes]
rs12534549	0.87[ASN][1000 genomes]
rs12666581	0.89[EUR][1000 genomes]
rs12669906	0.92[EUR][1000 genomes]
rs1317290	0.82[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1317429	0.88[JPT][hapmap]
rs1317892	0.89[JPT][hapmap]
rs17143199	0.83[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1922513	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1950148	0.94[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs2091792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2107796	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2107797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2107798	0.88[EUR][1000 genomes]
rs2107800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158609	1.00[ASN][1000 genomes]
rs2527294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2527308	1.00[ASN][1000 genomes]
rs2527310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2527314	1.00[ASN][1000 genomes]
rs2707432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28392825	1.00[ASN][1000 genomes]
rs28588236	1.00[ASN][1000 genomes]
rs28664864	0.82[ASN][1000 genomes]
rs28678480	0.91[ASN][1000 genomes]
rs3923570	0.84[CHB][hapmap]
rs3973938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4270841	0.84[EUR][1000 genomes]
rs4283926	0.84[EUR][1000 genomes]
rs4520056	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs4584034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719104	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs4719106	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4719107	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4719110	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs4719111	0.92[EUR][1000 genomes]
rs4719113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719114	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719116	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4719117	0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs56166024	0.80[ASN][1000 genomes]
rs57442026	0.97[ASN][1000 genomes]
rs59972409	0.80[ASN][1000 genomes]
rs6460650	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs6460651	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6460652	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6460653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6944999	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs6954049	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6967666	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6976592	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6977328	0.83[CHB][hapmap]
rs73181630	0.98[ASN][1000 genomes]
rs7385083	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7776752	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7787338	0.93[EUR][1000 genomes]
rs7787933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7788793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791195	1.00[ASN][1000 genomes]
rs7797409	0.91[EUR][1000 genomes]
rs9638616	0.83[JPT][hapmap]
rs9638620	0.82[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9654908	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9986866	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9986885	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:70793600-70802200	Weak transcription	Left Ventricle	heart
4	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:70794800-70804800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70796000-70804200	Weak transcription	Ovary	ovary
7	chr7:70799400-70805000	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70799600-70804800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:70800600-70802200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:70800600-70802200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:70801400-70802200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70801600-70805000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:70801600-70812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:70801800-70804800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:70801800-70805000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:70801800-70807600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:70802000-70804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:70802000-70804800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:70802000-70806800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links