Variant report

Variant	rs6967666
Chromosome Location	chr7:70792116-70792117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10230586	0.92[ASN][1000 genomes]
rs10265527	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10267524	0.92[ASN][1000 genomes]
rs10268327	0.92[ASN][1000 genomes]
rs10271589	0.92[ASN][1000 genomes]
rs10807731	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10950257	0.82[EUR][1000 genomes]
rs10950258	0.82[EUR][1000 genomes]
rs11760210	0.82[EUR][1000 genomes]
rs11761703	0.95[ASN][1000 genomes]
rs11768963	0.92[ASN][1000 genomes]
rs12154884	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12155139	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12155491	0.82[EUR][1000 genomes]
rs12155498	0.81[EUR][1000 genomes]
rs12534549	0.89[ASN][1000 genomes]
rs12669906	0.82[EUR][1000 genomes]
rs17143199	0.85[ASN][1000 genomes]
rs1922513	0.85[EUR][1000 genomes]
rs1950148	0.90[ASN][1000 genomes]
rs2091792	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2107797	0.92[ASN][1000 genomes]
rs2107800	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2158609	0.92[ASN][1000 genomes]
rs2527294	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2527308	0.92[ASN][1000 genomes]
rs2527310	0.91[ASN][1000 genomes]
rs2527314	0.92[ASN][1000 genomes]
rs2707432	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28392825	0.92[ASN][1000 genomes]
rs28588236	0.92[ASN][1000 genomes]
rs28664864	0.84[ASN][1000 genomes]
rs28678480	0.90[ASN][1000 genomes]
rs3973938	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4445102	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4520056	0.85[ASN][1000 genomes]
rs4584034	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4719104	0.80[ASN][1000 genomes]
rs4719107	0.81[ASN][1000 genomes]
rs4719111	0.82[EUR][1000 genomes]
rs4719113	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4719114	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4719116	0.85[EUR][1000 genomes]
rs4719117	0.83[ASN][1000 genomes]
rs57442026	0.96[ASN][1000 genomes]
rs6460650	0.84[EUR][1000 genomes]
rs6460651	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6460652	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6460653	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6944999	0.84[EUR][1000 genomes]
rs6954049	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6976592	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181630	0.95[ASN][1000 genomes]
rs7776752	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7787338	0.82[EUR][1000 genomes]
rs7787933	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7788793	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7791195	0.92[ASN][1000 genomes]
rs7797409	0.81[EUR][1000 genomes]
rs9638620	0.85[ASN][1000 genomes]
rs9654908	0.92[ASN][1000 genomes]
rs9986885	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70787800-70795400	Weak transcription	Ovary	ovary
3	chr7:70789000-70793200	Weak transcription	Fetal Lung	lung
4	chr7:70790000-70794800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:70790200-70794600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:70790600-70792200	Enhancers	HSMM	muscle
7	chr7:70790600-70793200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70790800-70792200	Weak transcription	Left Ventricle	heart
9	chr7:70790800-70792800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:70790800-70793000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:70790800-70793000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:70790800-70793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:70790800-70793400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:70790800-70793600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:70790800-70793600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:70790800-70794200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:70790800-70794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:70790800-70795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:70790800-70799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:70791000-70793200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:70791000-70794600	Enhancers	Fetal Heart	heart
23	chr7:70791200-70792200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:70791400-70793200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:70791800-70792800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:70792000-70794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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