Variant report

Variant	rs6976592
Chromosome Location	chr7:70796475-70796476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10230586	0.97[ASN][1000 genomes]
rs10246940	0.80[ASN][1000 genomes]
rs10265527	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10267524	0.97[ASN][1000 genomes]
rs10268327	0.97[ASN][1000 genomes]
rs10271589	0.97[ASN][1000 genomes]
rs10807731	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10950257	0.95[EUR][1000 genomes]
rs10950258	0.95[EUR][1000 genomes]
rs11760210	0.93[EUR][1000 genomes]
rs11761703	0.99[ASN][1000 genomes]
rs11768963	0.97[ASN][1000 genomes]
rs12154884	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155133	0.88[EUR][1000 genomes]
rs12155139	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12155491	0.95[EUR][1000 genomes]
rs12155498	0.93[EUR][1000 genomes]
rs12534549	0.91[ASN][1000 genomes]
rs12666581	0.90[EUR][1000 genomes]
rs12669906	0.93[EUR][1000 genomes]
rs1317290	0.82[ASN][1000 genomes]
rs1317429	0.83[ASN][1000 genomes]
rs1317892	0.83[ASN][1000 genomes]
rs17143199	0.86[ASN][1000 genomes]
rs1922513	0.99[EUR][1000 genomes]
rs1922525	0.81[ASN][1000 genomes]
rs1950148	0.91[ASN][1000 genomes]
rs2091792	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107797	0.97[ASN][1000 genomes]
rs2107798	0.88[EUR][1000 genomes]
rs2107800	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2158609	0.97[ASN][1000 genomes]
rs2527294	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2527308	0.97[ASN][1000 genomes]
rs2527310	0.95[ASN][1000 genomes]
rs2527314	0.97[ASN][1000 genomes]
rs2707432	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28392825	0.97[ASN][1000 genomes]
rs28588236	0.97[ASN][1000 genomes]
rs28664864	0.85[ASN][1000 genomes]
rs28678480	0.94[ASN][1000 genomes]
rs3973938	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270841	0.85[EUR][1000 genomes]
rs4283926	0.85[EUR][1000 genomes]
rs4445102	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4520056	0.86[ASN][1000 genomes]
rs4584034	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719104	0.84[ASN][1000 genomes]
rs4719107	0.85[ASN][1000 genomes]
rs4719110	0.90[EUR][1000 genomes]
rs4719111	0.94[EUR][1000 genomes]
rs4719113	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719114	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719116	0.99[EUR][1000 genomes]
rs4719117	0.87[ASN][1000 genomes]
rs56166024	0.81[ASN][1000 genomes]
rs57442026	1.00[ASN][1000 genomes]
rs59972409	0.81[ASN][1000 genomes]
rs6460650	0.96[EUR][1000 genomes]
rs6460651	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6460652	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6460653	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6944999	0.96[EUR][1000 genomes]
rs6954049	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967666	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181630	0.99[ASN][1000 genomes]
rs7385083	0.87[EUR][1000 genomes]
rs7776752	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7787338	0.95[EUR][1000 genomes]
rs7787933	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788793	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7791195	0.97[ASN][1000 genomes]
rs7797409	0.92[EUR][1000 genomes]
rs9638620	0.86[ASN][1000 genomes]
rs9654908	0.97[ASN][1000 genomes]
rs9986866	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9986885	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70784000-70808200	Weak transcription	Aorta	Aorta
2	chr7:70790800-70799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:70790800-70804800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:70793600-70802200	Weak transcription	Left Ventricle	heart
5	chr7:70794000-70800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70794400-70799000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70794400-70801400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:70794400-70801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:70794600-70799400	Weak transcription	Fetal Lung	lung
10	chr7:70794600-70800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:70794600-70800800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:70794600-70801400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:70794600-70801400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:70794600-70801400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:70794600-70806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:70794800-70801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:70794800-70804800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:70796000-70798600	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:70796000-70798800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:70796000-70804200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links