Variant report

Variant	rs1922525
Chromosome Location	chr7:70766925-70766926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70766833..70768385-chr7:70770081..70772817,2	K562	blood:

Variant related genes	Relation type
ENSG00000265878	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10238960	0.83[ASN][1000 genomes]
rs10246940	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11761703	0.80[ASN][1000 genomes]
rs11765927	0.83[EUR][1000 genomes]
rs12534549	0.81[ASN][1000 genomes]
rs12536668	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1317290	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1317429	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317892	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17143199	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1950148	0.82[ASN][1000 genomes]
rs2091792	0.81[ASN][1000 genomes]
rs28479972	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28664864	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28678480	0.86[ASN][1000 genomes]
rs3923569	0.83[ASN][1000 genomes]
rs3973938	0.81[ASN][1000 genomes]
rs4520056	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4719104	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4719106	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4719107	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4719109	0.83[ASN][1000 genomes]
rs56166024	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57442026	0.81[ASN][1000 genomes]
rs59972409	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6460649	0.83[ASN][1000 genomes]
rs6957946	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964131	0.83[ASN][1000 genomes]
rs6976592	0.81[ASN][1000 genomes]
rs6977328	0.82[ASN][1000 genomes]
rs7796585	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9638614	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9638616	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9638618	0.83[ASN][1000 genomes]
rs9638620	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70751200-70768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:70751800-70768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:70751800-70768800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:70764000-70768800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:70765600-70768200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:70765600-70768400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:70765800-70768200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:70765800-70768200	Weak transcription	HSMMtube	muscle
11	chr7:70765800-70768400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:70765800-70768400	Weak transcription	Fetal Stomach	stomach
13	chr7:70765800-70768400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:70765800-70768600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:70765800-70768600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:70765800-70768600	Weak transcription	Fetal Lung	lung
17	chr7:70765800-70769000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:70766000-70767600	Enhancers	Ovary	ovary
20	chr7:70766000-70768600	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:70766200-70769200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:70766200-70772400	Weak transcription	Fetal Muscle Leg	muscle

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