Variant report

Variant	rs9638614
Chromosome Location	chr7:70747828-70747829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10246940	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11765927	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12534549	0.81[AMR][1000 genomes]
rs12536668	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1317290	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1317429	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1317892	0.81[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17143199	0.81[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1922525	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1950148	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28479972	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28664864	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28678480	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4520056	0.82[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4719104	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4719106	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4719107	0.81[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4719117	0.90[YRI][hapmap]
rs56166024	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59972409	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6957946	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7790686	0.89[YRI][hapmap]
rs7796585	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9638616	0.80[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9638620	0.84[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70732400-70755400	Weak transcription	Right Atrium	heart
2	chr7:70739800-70750600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:70740000-70751600	Weak transcription	Left Ventricle	heart
4	chr7:70741200-70750600	Weak transcription	Ovary	ovary
5	chr7:70743600-70750200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70745400-70750600	Weak transcription	Pancreas	Pancrea
7	chr7:70745800-70755000	Weak transcription	Fetal Heart	heart
8	chr7:70746800-70748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:70747000-70748000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:70747200-70748000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:70747400-70748000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:70747400-70748000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:70747400-70748000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:70747400-70750600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70747600-70749800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:70747600-70750000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:70747600-70750000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:70747600-70750200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:70747600-70750400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:70747600-70751000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:70747800-70750400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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