Variant report

Variant	rs4520056
Chromosome Location	chr7:70772801-70772802
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10230586	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238960	0.81[ASN][1000 genomes]
rs10246940	0.84[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10265527	0.83[ASN][1000 genomes]
rs10267524	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10268327	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10271589	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10807731	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs10950257	0.84[JPT][hapmap]
rs11761703	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11765927	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11768963	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12154884	0.84[ASN][1000 genomes]
rs12155139	0.82[ASN][1000 genomes]
rs12534549	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12536668	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1317290	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1317429	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1317892	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17143199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922525	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1950148	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2091792	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs2107796	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2107797	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2107800	0.83[ASN][1000 genomes]
rs2158609	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2527294	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs2527308	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2527310	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2527314	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2707432	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs28392825	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28479972	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28588236	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28664864	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28678480	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3923569	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs3923570	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3973938	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs4445102	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs4584034	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs4719104	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4719106	0.90[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4719107	0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4719109	0.81[ASN][1000 genomes]
rs4719113	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs4719114	0.83[ASN][1000 genomes]
rs4719117	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56166024	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57442026	0.86[ASN][1000 genomes]
rs59972409	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6460649	0.81[ASN][1000 genomes]
rs6460651	0.85[ASN][1000 genomes]
rs6460652	0.83[ASN][1000 genomes]
rs6460653	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs6954049	0.81[ASN][1000 genomes]
rs6957946	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6964131	0.81[ASN][1000 genomes]
rs6967666	0.85[ASN][1000 genomes]
rs6976592	0.86[ASN][1000 genomes]
rs6977328	0.83[JPT][hapmap]
rs73181630	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7787933	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs7788793	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7790686	0.89[YRI][hapmap]
rs7791195	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7796585	0.80[ASN][1000 genomes]
rs9638614	0.82[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9638616	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs9638618	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs9638620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654908	0.95[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70752200-70773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70765000-70775400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:70769200-70773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70769600-70773000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:70769600-70773000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:70769600-70773000	Weak transcription	Fetal Lung	lung
8	chr7:70769600-70773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:70772200-70773200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:70772200-70773800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:70772200-70774200	Enhancers	Fetal Heart	heart
12	chr7:70772200-70774400	Enhancers	Rectal Smooth Muscle	rectum
13	chr7:70772200-70774400	Enhancers	HSMM	muscle
14	chr7:70772400-70773000	Enhancers	Aorta	Aorta
15	chr7:70772400-70773600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:70772400-70773600	Enhancers	Brain Anterior Caudate	brain
17	chr7:70772400-70773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr7:70772400-70774400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:70772400-70774400	Enhancers	Fetal Muscle Leg	muscle
20	chr7:70772400-70774400	Enhancers	NH-A	brain
21	chr7:70772600-70773000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:70772600-70773200	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr7:70772600-70773200	Flanking Active TSS	HSMMtube	muscle
24	chr7:70772600-70773600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:70772600-70773800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:70772600-70774000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:70772800-70773000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:70772800-70773000	Enhancers	Brain Angular Gyrus	brain
29	chr7:70772800-70773200	Enhancers	Psoas Muscle	Psoas
30	chr7:70772800-70773200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr7:70772800-70773400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:70772800-70773400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:70772800-70773600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:70772800-70773600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr7:70772800-70773600	Enhancers	Stomach Smooth Muscle	stomach
36	chr7:70772800-70773800	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr7:70772800-70773800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr7:70772800-70773800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr7:70772800-70774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:70772800-70774000	Enhancers	Fetal Muscle Trunk	muscle
41	chr7:70772800-70774000	Enhancers	Fetal Stomach	stomach
42	chr7:70772800-70774400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links