Variant report

Variant	rs10230586
Chromosome Location	chr7:70818852-70818853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10265527	1.00[ASN][1000 genomes]
rs10267524	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268327	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271589	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807731	0.95[ASN][1000 genomes]
rs11761703	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154884	0.94[ASN][1000 genomes]
rs12155139	0.99[ASN][1000 genomes]
rs12534549	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1317290	0.81[ASN][1000 genomes]
rs17143199	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1922513	0.80[ASN][1000 genomes]
rs1950148	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2091792	0.97[ASN][1000 genomes]
rs2107796	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2107797	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107800	1.00[ASN][1000 genomes]
rs2158609	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527294	0.99[ASN][1000 genomes]
rs2527308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527310	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2527314	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707432	1.00[ASN][1000 genomes]
rs28392825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664864	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28678480	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3973938	0.97[ASN][1000 genomes]
rs4445102	1.00[ASN][1000 genomes]
rs4520056	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4584034	1.00[ASN][1000 genomes]
rs4719104	0.83[ASN][1000 genomes]
rs4719107	0.84[ASN][1000 genomes]
rs4719113	1.00[ASN][1000 genomes]
rs4719114	1.00[ASN][1000 genomes]
rs4719116	0.80[ASN][1000 genomes]
rs4719117	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56166024	0.80[ASN][1000 genomes]
rs57442026	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59972409	0.80[ASN][1000 genomes]
rs6460651	0.98[ASN][1000 genomes]
rs6460652	0.99[ASN][1000 genomes]
rs6460653	0.99[ASN][1000 genomes]
rs6954049	0.94[ASN][1000 genomes]
rs6967666	0.92[ASN][1000 genomes]
rs6976592	0.97[ASN][1000 genomes]
rs73181630	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7776752	0.96[ASN][1000 genomes]
rs7787933	0.98[ASN][1000 genomes]
rs7788793	1.00[ASN][1000 genomes]
rs7791195	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638620	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986866	0.84[ASN][1000 genomes]
rs9986885	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814800-70821800	Weak transcription	Pancreas	Pancrea
2	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70814800-70829400	Weak transcription	Ovary	ovary
4	chr7:70815000-70826000	Weak transcription	Fetal Heart	heart
5	chr7:70815600-70819400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70817800-70819200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr7:70818400-70819000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70818800-70828800	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links