Variant report

Variant	rs9654908
Chromosome Location	chr7:70814125-70814126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10230586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238960	0.81[CHB][hapmap]
rs10246940	0.87[JPT][hapmap]
rs10265527	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10267524	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268327	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271589	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10950257	0.95[JPT][hapmap]
rs11761703	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768963	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154870	1.00[JPT][hapmap]
rs12154884	0.94[ASN][1000 genomes]
rs12155133	1.00[JPT][hapmap]
rs12155139	0.99[ASN][1000 genomes]
rs12534549	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1317290	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1317429	0.91[JPT][hapmap]
rs1317892	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs17143199	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1922513	0.80[ASN][1000 genomes]
rs1950148	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2091792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2107796	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2107797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107800	1.00[ASN][1000 genomes]
rs2158609	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2527308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527310	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2527314	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707432	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28392825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664864	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28678480	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3923569	0.80[CHB][hapmap]
rs3923570	0.83[CHB][hapmap]
rs3973938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4445102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4520056	0.95[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4584034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4719104	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4719106	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs4719107	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4719113	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4719114	1.00[ASN][1000 genomes]
rs4719116	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4719117	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56166024	0.80[ASN][1000 genomes]
rs57442026	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59972409	0.80[ASN][1000 genomes]
rs6460651	0.98[ASN][1000 genomes]
rs6460652	0.99[ASN][1000 genomes]
rs6460653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6954049	0.94[ASN][1000 genomes]
rs6967666	0.92[ASN][1000 genomes]
rs6976592	0.97[ASN][1000 genomes]
rs6977328	0.82[CHB][hapmap]
rs73181630	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7385083	1.00[JPT][hapmap]
rs7776752	0.96[ASN][1000 genomes]
rs7787933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7788793	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7790686	0.84[YRI][hapmap]
rs7791195	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638616	0.86[JPT][hapmap]
rs9638620	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9986866	0.84[ASN][1000 genomes]
rs9986885	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70812400-70815400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:70812600-70814200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:70812600-70814600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:70812600-70814600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70812600-70814800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:70812800-70814400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:70813200-70814400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:70813200-70814400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:70813200-70814600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr7:70813200-70814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:70813400-70814600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:70813400-70814600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:70813400-70814800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:70813400-70814800	Enhancers	Fetal Muscle Leg	muscle
15	chr7:70813600-70814200	Enhancers	Fetal Lung	lung
16	chr7:70813600-70814400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr7:70813600-70814800	Enhancers	Fetal Brain Female	brain
18	chr7:70813600-70814800	Enhancers	Fetal Stomach	stomach
19	chr7:70813600-70815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:70813800-70814200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:70813800-70814200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr7:70813800-70814200	Flanking Active TSS	Rectal Smooth Muscle	rectum
23	chr7:70813800-70814600	Active TSS	Colon Smooth Muscle	Colon
24	chr7:70813800-70814600	Flanking Active TSS	Fetal Brain Male	brain
25	chr7:70813800-70814800	Active TSS	Stomach Smooth Muscle	stomach
26	chr7:70813800-70815000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:70813800-70815000	Enhancers	Fetal Heart	heart
28	chr7:70814000-70814200	Flanking Active TSS	Ovary	ovary
29	chr7:70814000-70814400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:70814000-70814400	Active TSS	Brain Angular Gyrus	brain
31	chr7:70814000-70814400	Active TSS	Brain Anterior Caudate	brain
32	chr7:70814000-70814400	Bivalent Enhancer	Fetal Kidney	kidney
33	chr7:70814000-70814600	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr7:70814000-70814800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:70814000-70814800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr7:70814000-70814800	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr7:70814000-70814800	Active TSS	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links