Variant report

Variant	rs4719116
Chromosome Location	chr7:70826076-70826077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10230586	0.80[ASN][1000 genomes]
rs10246940	0.86[JPT][hapmap]
rs10265527	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10267524	0.80[ASN][1000 genomes]
rs10268327	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10271589	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10807731	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs10950257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10950258	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11760210	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11768963	0.80[ASN][1000 genomes]
rs12154870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12154884	0.98[EUR][1000 genomes]
rs12155133	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12155139	0.99[EUR][1000 genomes]
rs12155491	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12155498	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12666581	0.89[EUR][1000 genomes]
rs12669906	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1317290	0.90[JPT][hapmap]
rs1317429	0.90[JPT][hapmap]
rs1317892	0.91[JPT][hapmap]
rs17143199	0.86[JPT][hapmap]
rs1922513	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950148	0.90[JPT][hapmap]
rs2091792	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs2107796	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2107797	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2107798	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2107800	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2158609	0.80[ASN][1000 genomes]
rs2527294	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs2527308	0.80[ASN][1000 genomes]
rs2527310	1.00[JPT][hapmap]
rs2527314	0.80[ASN][1000 genomes]
rs2707432	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28392825	0.80[ASN][1000 genomes]
rs28588236	0.80[ASN][1000 genomes]
rs3973938	0.92[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs4270841	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs4283926	0.84[EUR][1000 genomes]
rs4445102	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4584034	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4719104	0.86[JPT][hapmap]
rs4719106	0.90[JPT][hapmap]
rs4719107	0.91[JPT][hapmap]
rs4719110	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4719111	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4719113	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4719114	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4719117	0.87[JPT][hapmap]
rs6460650	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs6460651	0.99[EUR][1000 genomes]
rs6460652	0.99[EUR][1000 genomes]
rs6460653	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs6944999	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs6954049	0.92[EUR][1000 genomes]
rs6967666	0.85[EUR][1000 genomes]
rs6976592	0.99[EUR][1000 genomes]
rs7385083	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7776752	0.92[EUR][1000 genomes]
rs7787338	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7787933	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs7788793	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7791195	0.80[ASN][1000 genomes]
rs7797409	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9638616	0.86[JPT][hapmap]
rs9638620	0.86[JPT][hapmap]
rs9654908	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9986885	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70814800-70828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70814800-70829400	Weak transcription	Ovary	ovary
3	chr7:70818800-70828800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:70819000-70828600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70821400-70826600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:70823000-70828600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:70825600-70829000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70826000-70826800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:70826000-70827200	Enhancers	Fetal Heart	heart
10	chr7:70826000-70827600	Weak transcription	Pancreas	Pancrea

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