Variant report

Variant	rs7797409
Chromosome Location	chr7:70779324-70779325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:70779133-70779470	HepG2	liver:	n/a	chr7:70779308-70779319 chr7:70779309-70779320 chr7:70779308-70779321 chr7:70779308-70779319 chr7:70779290-70779301
2	CEBPB	chr7:70779207-70779445	A549	lung:	n/a	chr7:70779308-70779319 chr7:70779309-70779320 chr7:70779308-70779321 chr7:70779308-70779319 chr7:70779290-70779301

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70774205..70776294-chr7:70779015..70781506,2	K562	blood:

Variant related genes	Relation type
ENSG00000266688	TF binding region
ENSG00000266688	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10265527	0.92[EUR][1000 genomes]
rs10807731	0.92[EUR][1000 genomes]
rs10950257	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10950258	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11760210	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154884	0.93[EUR][1000 genomes]
rs12155133	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12155139	0.91[EUR][1000 genomes]
rs12155491	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12155498	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12666581	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12669906	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922513	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2091792	0.92[EUR][1000 genomes]
rs2107796	0.87[ASN][1000 genomes]
rs2107798	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2107800	0.92[EUR][1000 genomes]
rs2527294	0.92[EUR][1000 genomes]
rs2707432	0.91[EUR][1000 genomes]
rs3973938	0.93[EUR][1000 genomes]
rs4445102	0.91[EUR][1000 genomes]
rs4584034	0.92[EUR][1000 genomes]
rs4719110	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4719111	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4719113	0.92[EUR][1000 genomes]
rs4719114	0.90[EUR][1000 genomes]
rs4719116	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6460650	0.90[EUR][1000 genomes]
rs6460651	0.92[EUR][1000 genomes]
rs6460652	0.92[EUR][1000 genomes]
rs6460653	0.92[EUR][1000 genomes]
rs6944999	0.90[EUR][1000 genomes]
rs6954049	0.86[EUR][1000 genomes]
rs6967666	0.81[EUR][1000 genomes]
rs6976592	0.92[EUR][1000 genomes]
rs7385083	0.82[ASN][1000 genomes]
rs7776752	0.86[EUR][1000 genomes]
rs7787338	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7787933	0.92[EUR][1000 genomes]
rs7788793	0.92[EUR][1000 genomes]
rs9986885	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70765800-70790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70773400-70780800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:70773400-70789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70774000-70779800	Weak transcription	Fetal Stomach	stomach
5	chr7:70777000-70788800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:70778000-70779400	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:70778200-70779400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:70778200-70779400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:70778200-70779400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:70778200-70779600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:70778200-70779600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70778400-70779400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:70778400-70779400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:70778800-70780200	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:70778800-70784400	Weak transcription	Brain Anterior Caudate	brain
16	chr7:70779000-70779800	Weak transcription	Fetal Lung	lung
17	chr7:70779000-70780600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:70779200-70782200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links